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Protein

Reticulophagy receptor Fam134b

Gene

Fam134b

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Endoplasmic reticulum-anchored autophagy receptor that mediates ER delivery into lysosomes through sequestration into autophagosomes (PubMed:26040720). Promotes membrane remodeling and ER scission via its membrane bending capacity and targets the fragments into autophagosomes via interaction with ATG8 family proteins (PubMed:26040720). Required for long-term survival of nociceptive and autonomic ganglion neurons (PubMed:19838196, PubMed:26040720).2 Publications

GO - Biological processi

  • negative regulation of neuron apoptotic process Source: GO_Central
  • reticulophagy Source: GO_Central
  • sensory perception of pain Source: UniProtKB
Complete GO annotation...

Keywords - Biological processi

Autophagy

Names & Taxonomyi

Protein namesi
Recommended name:
Reticulophagy receptor Fam134bCurated
Gene namesi
Name:Fam134b
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 15

Organism-specific databases

MGIiMGI:1913520. Fam134b.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 4242CytoplasmicBy similarityAdd
BLAST
Transmembranei43 – 6422HelicalSequence analysisAdd
BLAST
Topological domaini65 – 7511LumenalCuratedAdd
BLAST
Transmembranei76 – 9318HelicalSequence analysisAdd
BLAST
Topological domaini94 – 985CytoplasmicCurated
Transmembranei99 – 11618HelicalSequence analysisAdd
BLAST
Topological domaini117 – 19175LumenalCuratedAdd
BLAST
Transmembranei192 – 21221HelicalSequence analysisAdd
BLAST
Topological domaini213 – 480268CytoplasmicBy similarityAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Endoplasmic reticulum, Golgi apparatus, Membrane

Pathology & Biotechi

Disruption phenotypei

Leads to an expanded endoplasmic reticulum.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 480480Reticulophagy receptor Fam134bPRO_0000288467Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei340 – 3401PhosphothreonineCombined sources

Keywords - PTMi

Phosphoprotein

Proteomic databases

EPDiQ8VE91.
MaxQBiQ8VE91.
PaxDbiQ8VE91.
PRIDEiQ8VE91.

PTM databases

iPTMnetiQ8VE91.
PhosphoSiteiQ8VE91.

Expressioni

Tissue specificityi

Predominantly expressed in sensory and autonomic ganglia has demonstrated by in situ hybridizations of embryonic day 14.5 mouse embryo sections. Detected specifically in organelle-like intracellular structures of the small and large neurons of dorsal root ganglia (DRG) and in Neuro-2a cells, a tumor cell line that is related to autonomic ganglion neurons (at protein level).1 Publication

Gene expression databases

BgeeiQ8VE91.
GenevisibleiQ8VE91. MM.

Interactioni

Subunit structurei

Interacts with ATG8 family modifier proteins MAP1LC3A, MAP1LC3B, GABARAP, GABARAPL1 and GABARAPL2.By similarity

Protein-protein interaction databases

DIPiDIP-61579N.
STRINGi10090.ENSMUSP00000022881.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini67 – 216150ReticulonPROSITE-ProRule annotationAdd
BLAST

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi436 – 4416LIR motifBy similarity

Domaini

The LIR motif interacts with ATG8 family proteins and is necessary to target the ER fragments to autophagosomes for lysosomal degradation.1 Publication
The reticulon domain provides capacity to bend the membrane and promotes ER scission.1 Publication

Sequence similaritiesi

Belongs to the FAM134 family.Curated
Contains 1 reticulon domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410IFP1. Eukaryota.
ENOG410XPQB. LUCA.
GeneTreeiENSGT00530000063240.
HOGENOMiHOG000050246.
HOVERGENiHBG071073.
InParanoidiQ8VE91.
OMAiAESWMNF.
OrthoDBiEOG7J70FV.
TreeFamiTF329111.

Family and domain databases

InterProiIPR033358. FAM134B.
[Graphical view]
PANTHERiPTHR28659:SF3. PTHR28659:SF3. 1 hit.
PROSITEiPS50845. RETICULON. 1 hit.
[Graphical view]

Sequences (4)i

Sequence statusi: Complete.

This entry describes 4 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 4 (identifier: Q8VE91-4) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MASPAPEEHA TQGCPATEEQ PPRPGVPGEE AGPEGAGPQV EEAAGRVAAA
60 70 80 90 100
LTWLLGEPVL WLGWRADELL SWKRPLRSLL TFLGANLLFW FLALTPWRVY
110 120 130 140 150
HLISVMILGR VIMQIIKEMV LSRTRGAQLW RSLTESWEVI NSKPDERARL
160 170 180 190 200
SQCIAESWMN FSMFLQEMSL FKQQSPGKFC LLVCSVCTFF TILGSYIPGV
210 220 230 240 250
ILSYLLLLFA FLCPLFKCND IGQKIYSKVK SILLKLDFGI GEYINQKKRE
260 270 280 290 300
RSEADKEKSH KDDSELDFSA LCPKISLTVA AKELSVSDTD VSEVSWTDNG
310 320 330 340 350
TFNLSEGYTP QTDTSDDLDR PSEEVFSRDL SDFPSLENGT GTNDEDELSL
360 370 380 390 400
GLPTELKRKK QQLDSAHRPS KERQSAAGLS LPLKSDQALH LMSNLAGDVI
410 420 430 440 450
TAAMTAAIKD QLEGARQALT QVAPTAGEDT DTEEGDDFEL LDQAELDQIE
460 470 480
SELGLTQDQG AEAQQSKKSS GFLSNLLGGH
Note: Predicted by similarity to human, no experimental confirmation available.
Length:480
Mass (Da):52,967
Last modified:September 16, 2015 - v2
Checksum:i6181AF418CBCC29A
GO
Isoform 1 (identifier: Q8VE91-1) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-134: MASPAPEEHA...RGAQLWRSLT → MLGDWAALLPSCLSRCWS

Show »
Length:364
Mass (Da):40,142
Checksum:iF9CABAA6944E3510
GO
Isoform 2 (identifier: Q8VE91-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-135: MASPAPEEHA...GAQLWRSLTE → MPAGGGCGPGR

Show »
Length:356
Mass (Da):38,963
Checksum:i94B899C82D774FA9
GO
Isoform 3 (identifier: Q8VE91-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-135: MASPAPEEHA...GAQLWRSLTE → M

Show »
Length:346
Mass (Da):38,153
Checksum:iA49678F437BB1459
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 135135MASPA…RSLTE → MPAGGGCGPGR in isoform 2. VSP_057836Add
BLAST
Alternative sequencei1 – 135135MASPA…RSLTE → M in isoform 3. VSP_057837Add
BLAST
Alternative sequencei1 – 134134MASPA…WRSLT → MLGDWAALLPSCLSRCWS in isoform 1. VSP_057838Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK007506 mRNA. Translation: BAB25077.1.
AK146972 mRNA. Translation: BAE27577.1.
AK015887 mRNA. Translation: BAB30019.1.
AK167327 mRNA. Translation: BAE39429.1.
AC131178 Genomic DNA. No translation available.
AC162303 Genomic DNA. No translation available.
BC019494 mRNA. Translation: AAH19494.1.
BC054415 mRNA. Translation: AAH54415.1.
CCDSiCCDS37050.1. [Q8VE91-4]
CCDS37051.1. [Q8VE91-2]
RefSeqiNP_001030023.1. NM_001034851.2. [Q8VE91-4]
NP_001264244.1. NM_001277315.1. [Q8VE91-2]
NP_001264245.1. NM_001277316.1. [Q8VE91-1]
NP_001264246.1. NM_001277317.1. [Q8VE91-3]
NP_079735.2. NM_025459.3. [Q8VE91-2]
XP_006520197.1. XM_006520134.2. [Q8VE91-2]
UniGeneiMm.25311.

Genome annotation databases

EnsembliENSMUST00000022881; ENSMUSP00000022881; ENSMUSG00000022270. [Q8VE91-4]
ENSMUST00000110438; ENSMUSP00000106068; ENSMUSG00000022270. [Q8VE91-2]
GeneIDi66270.
KEGGimmu:66270.
UCSCiuc007vjg.2. mouse. [Q8VE91-4]
uc007vji.2. mouse. [Q8VE91-2]
uc033gth.1. mouse. [Q8VE91-3]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK007506 mRNA. Translation: BAB25077.1.
AK146972 mRNA. Translation: BAE27577.1.
AK015887 mRNA. Translation: BAB30019.1.
AK167327 mRNA. Translation: BAE39429.1.
AC131178 Genomic DNA. No translation available.
AC162303 Genomic DNA. No translation available.
BC019494 mRNA. Translation: AAH19494.1.
BC054415 mRNA. Translation: AAH54415.1.
CCDSiCCDS37050.1. [Q8VE91-4]
CCDS37051.1. [Q8VE91-2]
RefSeqiNP_001030023.1. NM_001034851.2. [Q8VE91-4]
NP_001264244.1. NM_001277315.1. [Q8VE91-2]
NP_001264245.1. NM_001277316.1. [Q8VE91-1]
NP_001264246.1. NM_001277317.1. [Q8VE91-3]
NP_079735.2. NM_025459.3. [Q8VE91-2]
XP_006520197.1. XM_006520134.2. [Q8VE91-2]
UniGeneiMm.25311.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-61579N.
STRINGi10090.ENSMUSP00000022881.

PTM databases

iPTMnetiQ8VE91.
PhosphoSiteiQ8VE91.

Proteomic databases

EPDiQ8VE91.
MaxQBiQ8VE91.
PaxDbiQ8VE91.
PRIDEiQ8VE91.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000022881; ENSMUSP00000022881; ENSMUSG00000022270. [Q8VE91-4]
ENSMUST00000110438; ENSMUSP00000106068; ENSMUSG00000022270. [Q8VE91-2]
GeneIDi66270.
KEGGimmu:66270.
UCSCiuc007vjg.2. mouse. [Q8VE91-4]
uc007vji.2. mouse. [Q8VE91-2]
uc033gth.1. mouse. [Q8VE91-3]

Organism-specific databases

CTDi54463.
MGIiMGI:1913520. Fam134b.

Phylogenomic databases

eggNOGiENOG410IFP1. Eukaryota.
ENOG410XPQB. LUCA.
GeneTreeiENSGT00530000063240.
HOGENOMiHOG000050246.
HOVERGENiHBG071073.
InParanoidiQ8VE91.
OMAiAESWMNF.
OrthoDBiEOG7J70FV.
TreeFamiTF329111.

Miscellaneous databases

ChiTaRSiFam134b. mouse.
PROiQ8VE91.
SOURCEiSearch...

Gene expression databases

BgeeiQ8VE91.
GenevisibleiQ8VE91. MM.

Family and domain databases

InterProiIPR033358. FAM134B.
[Graphical view]
PANTHERiPTHR28659:SF3. PTHR28659:SF3. 1 hit.
PROSITEiPS50845. RETICULON. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1; 2 AND 3).
    Strain: C57BL/6J.
    Tissue: Liver, Pancreas and Testis.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6J.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
    Strain: FVB/N.
    Tissue: Mammary tumor.
  4. Cited for: FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY.
  5. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-340, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Pancreas.
  6. Cited for: FUNCTION, DOMAIN, DISRUPTION PHENOTYPE.

Entry informationi

Entry nameiF134B_MOUSE
AccessioniPrimary (citable) accession number: Q8VE91
Secondary accession number(s): E9QPM1
, Q7TMY5, Q9CUJ4, Q9D8Z5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 29, 2007
Last sequence update: September 16, 2015
Last modified: June 8, 2016
This is version 96 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.