Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Guanine nucleotide exchange factor for Rab-3A

Gene

Rab3il1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Guanine nucleotide exchange factor (GEF) which may activate RAB3A, a GTPase that regulates synaptic vesicle exocytosis. Promotes the exchange of GDP to GTP, converting inactive GDP-bound Rab proteins into their active GTP-bound form. May also activates RAB8A and RAB8B (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Guanine-nucleotide releasing factor

Keywords - Biological processi

Protein transport, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Guanine nucleotide exchange factor for Rab-3A
Alternative name(s):
Rab-3A-interacting-like protein 1
Short name:
Rab3A-interacting-like protein 1
Rabin3-like 1
Gene namesi
Name:Rab3il1
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 19

Organism-specific databases

MGIiMGI:1922010. Rab3il1.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 383383Guanine nucleotide exchange factor for Rab-3APRO_0000305296Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei169 – 1691PhosphoserineCombined sources
Modified residuei180 – 1801PhosphoserineBy similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiQ8VDV3.
PaxDbiQ8VDV3.
PRIDEiQ8VDV3.

PTM databases

iPTMnetiQ8VDV3.
PhosphoSiteiQ8VDV3.

Expressioni

Gene expression databases

BgeeiQ8VDV3.
CleanExiMM_RAB3IL1.
ExpressionAtlasiQ8VDV3. baseline and differential.
GenevisibleiQ8VDV3. MM.

Interactioni

Subunit structurei

Interacts with RAB3A and IHPK1 through the coiled-coil domain. This interaction is competitive. IHPK1 kinase activity is not required for this interaction (By similarity).By similarity

Protein-protein interaction databases

BioGridi217000. 1 interaction.
STRINGi10090.ENSMUSP00000108786.

Structurei

3D structure databases

ProteinModelPortaliQ8VDV3.
SMRiQ8VDV3. Positions 80-143, 216-382.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili77 – 12852Sequence analysisAdd
BLAST

Sequence similaritiesi

Belongs to the SEC2 family.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiKOG4324. Eukaryota.
ENOG410XPSY. LUCA.
GeneTreeiENSGT00390000009036.
HOGENOMiHOG000220814.
HOVERGENiHBG057034.
InParanoidiQ8VDV3.
KOiK16779.
OMAiDEGHPPP.
OrthoDBiEOG7KSX8Q.
PhylomeDBiQ8VDV3.
TreeFamiTF313748.

Family and domain databases

InterProiIPR009449. Sec2_N.
[Graphical view]
PfamiPF06428. Sec2p. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q8VDV3-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MWSGQPQQDE GLPVGLSAIP VPWKNLGPSK SNRESSGGLV EASTSWEEAQ
60 70 80 90 100
GEEHPAPAPL DVSRLRSSSM EIREKGSEFL KEELYKAQKE LKLKDEECER
110 120 130 140 150
LCKVRAQLEQ ELEELTASLF EEAHKMVREA NMKQATSEKQ LKEAWGKIDM
160 170 180 190 200
LQAEVTALKT LVITSTPASP NRELHPQLLS PTKAGPRKGH SRQKSTSSSL
210 220 230 240 250
CPVVCPTAGH IPTPDKEGKE VDTTLFAEFQ AWRASPTLDK SCPFLERVYR
260 270 280 290 300
EDVGPCLDFT VQELSALVRT AVEDNTLTIE PVASQTLPAV KVPTVECNNT
310 320 330 340 350
NTCALSGLAR TCHHRIRLGD SDSHYYISPS SRARITAVCN FFTYIRYIQQ
360 370 380
GLVRQDAEPM FWEIMRLRKG MSLAKLGFFP QEA
Length:383
Mass (Da):42,713
Last modified:March 1, 2002 - v1
Checksum:i30B2F1C12495BF82
GO
Isoform 2 (identifier: Q8VDV3-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-69: Missing.

Show »
Length:314
Mass (Da):35,420
Checksum:iEE1870D9F4F24584
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 6969Missing in isoform 2. 1 PublicationVSP_028346Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK132764 mRNA. Translation: BAE21345.1.
AK161298 mRNA. Translation: BAE36305.1.
BC020147 mRNA. Translation: AAH20147.1.
CCDSiCCDS29569.1. [Q8VDV3-1]
RefSeqiNP_653121.1. NM_144538.2. [Q8VDV3-1]
XP_006527481.1. XM_006527418.1. [Q8VDV3-2]
UniGeneiMm.281969.

Genome annotation databases

EnsembliENSMUST00000113161; ENSMUSP00000108786; ENSMUSG00000024663. [Q8VDV3-1]
ENSMUST00000121418; ENSMUSP00000113828; ENSMUSG00000024663. [Q8VDV3-2]
ENSMUST00000144788; ENSMUSP00000121449; ENSMUSG00000024663. [Q8VDV3-1]
GeneIDi74760.
KEGGimmu:74760.
UCSCiuc008gov.1. mouse. [Q8VDV3-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK132764 mRNA. Translation: BAE21345.1.
AK161298 mRNA. Translation: BAE36305.1.
BC020147 mRNA. Translation: AAH20147.1.
CCDSiCCDS29569.1. [Q8VDV3-1]
RefSeqiNP_653121.1. NM_144538.2. [Q8VDV3-1]
XP_006527481.1. XM_006527418.1. [Q8VDV3-2]
UniGeneiMm.281969.

3D structure databases

ProteinModelPortaliQ8VDV3.
SMRiQ8VDV3. Positions 80-143, 216-382.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi217000. 1 interaction.
STRINGi10090.ENSMUSP00000108786.

PTM databases

iPTMnetiQ8VDV3.
PhosphoSiteiQ8VDV3.

Proteomic databases

MaxQBiQ8VDV3.
PaxDbiQ8VDV3.
PRIDEiQ8VDV3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000113161; ENSMUSP00000108786; ENSMUSG00000024663. [Q8VDV3-1]
ENSMUST00000121418; ENSMUSP00000113828; ENSMUSG00000024663. [Q8VDV3-2]
ENSMUST00000144788; ENSMUSP00000121449; ENSMUSG00000024663. [Q8VDV3-1]
GeneIDi74760.
KEGGimmu:74760.
UCSCiuc008gov.1. mouse. [Q8VDV3-1]

Organism-specific databases

CTDi5866.
MGIiMGI:1922010. Rab3il1.

Phylogenomic databases

eggNOGiKOG4324. Eukaryota.
ENOG410XPSY. LUCA.
GeneTreeiENSGT00390000009036.
HOGENOMiHOG000220814.
HOVERGENiHBG057034.
InParanoidiQ8VDV3.
KOiK16779.
OMAiDEGHPPP.
OrthoDBiEOG7KSX8Q.
PhylomeDBiQ8VDV3.
TreeFamiTF313748.

Miscellaneous databases

NextBioi341572.
PROiQ8VDV3.
SOURCEiSearch...

Gene expression databases

BgeeiQ8VDV3.
CleanExiMM_RAB3IL1.
ExpressionAtlasiQ8VDV3. baseline and differential.
GenevisibleiQ8VDV3. MM.

Family and domain databases

InterProiIPR009449. Sec2_N.
[Graphical view]
PfamiPF06428. Sec2p. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
    Strain: C57BL/6J.
    Tissue: Testis.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Strain: FVB/N.
    Tissue: Mammary tumor.
  3. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-169, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Heart, Kidney, Lung and Spleen.

Entry informationi

Entry nameiR3GEF_MOUSE
AccessioniPrimary (citable) accession number: Q8VDV3
Secondary accession number(s): Q3TTM0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 2, 2007
Last sequence update: March 1, 2002
Last modified: January 20, 2016
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.