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Protein

Transmembrane protein 97

Gene

Tmem97

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Plays a role as a regulator of cellular cholesterol homeostasis. May function as sterol isomerase.By similarity

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Transmembrane protein 97
Gene namesi
Name:Tmem97
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 11

Organism-specific databases

MGIiMGI:1916321. Tmem97.

Subcellular locationi

  • Nucleus membrane By similarity
  • Rough endoplasmic reticulum By similarity
  • Cell membrane By similarity
  • Lysosome By similarity
  • Membrane By similarity; Multi-pass membrane protein By similarity

  • Note: Localized in sterol-depleted cells at cell membrane and in lysosomes.By similarity

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 99CytoplasmicSequence analysis
Transmembranei10 – 3021Helical; Name=1Sequence analysisAdd
BLAST
Topological domaini31 – 6838ExtracellularSequence analysisAdd
BLAST
Transmembranei69 – 8921Helical; Name=2Sequence analysisAdd
BLAST
Topological domaini90 – 9910CytoplasmicSequence analysis
Transmembranei100 – 12021Helical; Name=3Sequence analysisAdd
BLAST
Topological domaini121 – 14020ExtracellularSequence analysisAdd
BLAST
Transmembranei141 – 16121Helical; Name=4Sequence analysisAdd
BLAST
Topological domaini162 – 17615CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Endoplasmic reticulum, Lysosome, Membrane, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 176176Transmembrane protein 97PRO_0000254569Add
BLAST

Proteomic databases

MaxQBiQ8VD00.
PaxDbiQ8VD00.
PRIDEiQ8VD00.
TopDownProteomicsiQ8VD00.

PTM databases

iPTMnetiQ8VD00.
PhosphoSiteiQ8VD00.

Expressioni

Gene expression databases

BgeeiQ8VD00.
CleanExiMM_TMEM97.
GenevisibleiQ8VD00. MM.

Interactioni

Subunit structurei

Interacts with NPC1.By similarity

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000099532.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini10 – 158149EXPERAPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the TMEM97 family.Curated
Contains 1 EXPERA domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410IX1Z. Eukaryota.
ENOG4111RR6. LUCA.
GeneTreeiENSGT00390000007149.
HOGENOMiHOG000031140.
HOVERGENiHBG079913.
InParanoidiQ8VD00.
OMAiFKGGCKW.
OrthoDBiEOG7W41DC.
PhylomeDBiQ8VD00.
TreeFamiTF300241.

Family and domain databases

InterProiIPR033118. EXPERA.
IPR016964. Transmembrane_97.
[Graphical view]
PIRSFiPIRSF031032. TMP_97_prd. 1 hit.
PROSITEiPS51751. EXPERA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8VD00-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGALAARRCV EWLLGLYFVS HIPITLFIDL QAVLPPELYP QEFSNLLRWY
60 70 80 90 100
SKEFKDPLMQ EPPVWFKSFL LCELVFQLPF FPIAAYAFFK GSCRWIRIPA
110 120 130 140 150
IIYAAHTITT LIPILYTLLF EDFSKAVAFK GQRPESFRER LTLVGVYAPY
160 170
LIIPLILLLF MLRNPYYKYE EKRKKK
Length:176
Mass (Da):20,811
Last modified:March 1, 2002 - v1
Checksum:i245D2427FC03AE2E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK155107 mRNA. Translation: BAE33052.1.
AK171954 mRNA. Translation: BAE42746.1.
AL591177 Genomic DNA. Translation: CAI25555.1.
BC018156 mRNA. Translation: AAH18156.1.
BC093511 mRNA. Translation: AAH93511.1.
CCDSiCCDS25112.1.
RefSeqiNP_598467.1. NM_133706.2.
UniGeneiMm.29431.

Genome annotation databases

EnsembliENSMUST00000103242; ENSMUSP00000099532; ENSMUSG00000037278.
GeneIDi69071.
KEGGimmu:69071.
UCSCiuc007kjv.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK155107 mRNA. Translation: BAE33052.1.
AK171954 mRNA. Translation: BAE42746.1.
AL591177 Genomic DNA. Translation: CAI25555.1.
BC018156 mRNA. Translation: AAH18156.1.
BC093511 mRNA. Translation: AAH93511.1.
CCDSiCCDS25112.1.
RefSeqiNP_598467.1. NM_133706.2.
UniGeneiMm.29431.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000099532.

PTM databases

iPTMnetiQ8VD00.
PhosphoSiteiQ8VD00.

Proteomic databases

MaxQBiQ8VD00.
PaxDbiQ8VD00.
PRIDEiQ8VD00.
TopDownProteomicsiQ8VD00.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000103242; ENSMUSP00000099532; ENSMUSG00000037278.
GeneIDi69071.
KEGGimmu:69071.
UCSCiuc007kjv.1. mouse.

Organism-specific databases

CTDi27346.
MGIiMGI:1916321. Tmem97.

Phylogenomic databases

eggNOGiENOG410IX1Z. Eukaryota.
ENOG4111RR6. LUCA.
GeneTreeiENSGT00390000007149.
HOGENOMiHOG000031140.
HOVERGENiHBG079913.
InParanoidiQ8VD00.
OMAiFKGGCKW.
OrthoDBiEOG7W41DC.
PhylomeDBiQ8VD00.
TreeFamiTF300241.

Miscellaneous databases

PROiQ8VD00.
SOURCEiSearch...

Gene expression databases

BgeeiQ8VD00.
CleanExiMM_TMEM97.
GenevisibleiQ8VD00. MM.

Family and domain databases

InterProiIPR033118. EXPERA.
IPR016964. Transmembrane_97.
[Graphical view]
PIRSFiPIRSF031032. TMP_97_prd. 1 hit.
PROSITEiPS51751. EXPERA. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: NOD.
    Tissue: Dendritic cell and Spleen.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6J.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: FVB/N.
    Tissue: Liver and Salivary gland.
  4. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Liver, Pancreas and Testis.

Entry informationi

Entry nameiTMM97_MOUSE
AccessioniPrimary (citable) accession number: Q8VD00
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: March 1, 2002
Last modified: June 8, 2016
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.