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Unreviewed, UniProtKB/TrEMBL Q8VC27 (Q8VC27_MOUSE)

Last modified January 19, 2010. Version 44. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information

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Names and origin

Protein namesSubmitted name:
    Nfkbib protein EMBL AAH21938.1
Gene names
Name: Nfkbib MGI 104752
OrganismMus musculus (Mouse) EMBL AAH21938.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus

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Protein attributes

Sequence length359 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level.

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Ontologies

Keywords
   DomainANK repeat RuleBase RU003321V2
Repeat RuleBase RU003536V1
Gene Ontology (GO)
   Biological processcytoplasmic sequestering of NF-kappaB

Inferred from electronic annotation. Source: Compara

   Cellular componentcytosol

Inferred from electronic annotation. Source: Compara

   Molecular functionprotein binding

Inferred from electronic annotation. Source: Compara

Complete GO annotation...

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Sequences

Sequence LengthMass (Da)Tools
Q8VC27-1 [UniParc].

Last modified March 1, 2002. Version 1.
Checksum: 0E2B57389E2404EF

FASTA35937,938
        10         20         30         40         50         60 
MAGVACLGKT ADADEWCDSG LGSLGPDAAA PGGPGLGAEL GPELSWAPLV FGYVTEDGDT 

        70         80         90        100        110        120 
ALHLAVIHQH EPFLDFLLGF SAGTEYLDLQ NDLGQTALHL AAILGEASTV EKLYAAGAGV 

       130        140        150        160        170        180 
LVAERGGHTA LHLACRVRAH TCACVLLQPR PSHPRDASDT YLTQSQDCTP DTSHAPAAVD 

       190        200        210        220        230        240 
SQPNPENEEE PRDEDWRLQL EAENYDGHTP LHVAVIHKDA EMVRLLRDAG ADLNKPEPTC 

       250        260        270        280        290        300 
GRTPLHLAVE AQAASVLELL LKAGADPTAR MYGGRTPLGS ALLRPNPILA RLLRAHGAPE 

       310        320        330        340        350 
PEDEDDKLSP CSSSGSDSDS DNRDEGDEYD DIVVHSGRSQ NRQPPSPASK PLPDDPSPA

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References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: FVB/N EMBL AAH21938.1.
Tissue: Liver EMBL AAH21938.1.
+Additional computationally mapped references.

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Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BC021938 mRNA. Translation: AAH21938.1.
IPIIPI00556848.
PIRA55839.
UniGeneMm.220333

3D structure databases

HSSPHSSP built from PDB template 1OY3 based on UniProtKB Q60778.
SMRQ8VC27. Positions 50-303.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ8VC27.

Genome annotation databases

EnsemblENSMUST00000032815; ENSMUSP00000032815; ENSMUSG00000030595; Mus musculus. [Genome view]
ENSMUST00000085851; ENSMUSP00000083012; ENSMUSG00000030595; Mus musculus. [Genome view]

Organism-specific databases

MGIMGI:104752. Nfkbib.

Phylogenomic databases

HOVERGENQ8VC27.
InParanoidQ8VC27.

Gene expression databases

ArrayExpressQ8VC27.
BgeeQ8VC27.
GenevestigatorQ8VC27.

Family and domain databases

InterProIPR002110. Ankyrin_rpt.
IPR020683. Ankyrin_rpt-contain_dom.
IPR015681. NF_kB_inhbitor.
[Graphical view]
Gene3DG3DSA:1.25.40.20. ANK. 1 hit.
PANTHERPTHR18958:SF236. NF_kB_inhbitor. 1 hit.
PfamPF00023. Ank. 2 hits.
[Graphical view]
SMARTSM00248. ANK. 6 hits.
[Graphical view]
PROSITEPS50297. ANK_REP_REGION. 1 hit.
PS50088. ANK_REPEAT. 4 hits.
[Graphical view]
ProtoNetSearch...

Other Resources

SOURCESearch...

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Entry information

Entry nameQ8VC27_MOUSE
AccessionPrimary (citable) accession number: Q8VC27
Entry history
Integrated into UniProtKB/TrEMBL: March 1, 2002
Last sequence update: March 1, 2002
Last modified: January 19, 2010
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information