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Q8UJ04

- DEOB_AGRT5

UniProt

Q8UJ04 - DEOB_AGRT5

Protein

Phosphopentomutase

Gene

deoB

Organism
Agrobacterium tumefaciens (strain C58 / ATCC 33970)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 78 (01 Oct 2014)
      Sequence version 1 (01 Jun 2002)
      Previous versions | rss
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    Functioni

    Phosphotransfer between the C1 and C5 carbon atoms of pentose.UniRule annotation

    Catalytic activityi

    Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate.UniRule annotation
    2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate.UniRule annotation

    Cofactori

    Binds 1 or 2 manganese ions.UniRule annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi10 – 101ManganeseUniRule annotation
    Metal bindingi310 – 3101ManganeseUniRule annotation
    Metal bindingi346 – 3461ManganeseUniRule annotation
    Metal bindingi347 – 3471ManganeseUniRule annotation
    Metal bindingi358 – 3581ManganeseUniRule annotation

    GO - Molecular functioni

    1. magnesium ion binding Source: InterPro
    2. manganese ion binding Source: UniProtKB-HAMAP
    3. phosphopentomutase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. 5-phosphoribose 1-diphosphate biosynthetic process Source: UniProtKB-UniPathway
    2. cellular metabolic compound salvage Source: InterPro
    3. deoxyribonucleotide catabolic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Isomerase

    Keywords - Ligandi

    Manganese, Metal-binding

    Enzyme and pathway databases

    BioCyciAGRO:ATU0137-MONOMER.
    UniPathwayiUPA00087; UER00173.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    PhosphopentomutaseUniRule annotation (EC:5.4.2.7UniRule annotation)
    Alternative name(s):
    PhosphodeoxyribomutaseUniRule annotation
    Gene namesi
    Name:deoBUniRule annotation
    Synonyms:drm
    Ordered Locus Names:Atu0137
    ORF Names:AGR_C_219
    OrganismiAgrobacterium tumefaciens (strain C58 / ATCC 33970)
    Taxonomic identifieri176299 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacteriumAgrobacterium tumefaciens complex
    ProteomesiUP000000813: Chromosome circular

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 406406PhosphopentomutasePRO_0000199805Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi176299.Atu0137.

    Structurei

    3D structure databases

    ProteinModelPortaliQ8UJ04.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the phosphopentomutase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1015.
    HOGENOMiHOG000008159.
    KOiK01839.
    OMAiHAMKVGR.
    OrthoDBiEOG6R5C7J.

    Family and domain databases

    Gene3Di3.30.70.1250. 1 hit.
    3.40.720.10. 2 hits.
    HAMAPiMF_00740. Phosphopentomut.
    InterProiIPR017849. Alkaline_Pase-like_a/b/a.
    IPR017850. Alkaline_phosphatase_core.
    IPR010045. DeoB.
    IPR006124. Metalloenzyme.
    IPR024052. Phosphopentomutase_DeoB_cap.
    [Graphical view]
    PfamiPF01676. Metalloenzyme. 1 hit.
    [Graphical view]
    PIRSFiPIRSF001491. Ppentomutase. 1 hit.
    SUPFAMiSSF143856. SSF143856. 1 hit.
    SSF53649. SSF53649. 2 hits.
    TIGRFAMsiTIGR01696. deoB. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q8UJ04-1 [UniParc]FASTAAdd to Basket

    « Hide

    MARAFLLVLD SFGVGGAPDA ERYGDLGANT LGHIAEFCAA GAADRAGLRA    50
    GPLKLPNMCS LGLLEIARQA SGDIPAGMEP PERIFGLHGS ASEISKGKDT 100
    PSGHWEIAGT PVTFDWGYFP TEGDAFSPEL VEAICRQADI PGILGNCHAS 150
    GTEIIAALGE EHIRSGKPIC YTSSDSVFQI AAHETHFGLD RLIALCETVR 200
    KLLDPLNIGR VIARPFIGET VATFERTGNR RDFSVPPPEP TLLDRLVEAG 250
    RKVHAIGKIG DIYAHQGVTR VIKANGNAAL MDATLHAIDE AENGDLVFTN 300
    FVDFDMLYGH RRDVAGYAAA LEAFDARIPE IHRKMAPGDI ALLTADHGCD 350
    PTWRGTDHTR ERVPIMAFGP GIRSRDVGIR SSYADIGESI AHHLGIEAGS 400
    HGRSFI 406
    Length:406
    Mass (Da):43,457
    Last modified:June 1, 2002 - v1
    Checksum:i9358AEF652AB5F38
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE007869 Genomic DNA. Translation: AAK85958.1.
    PIRiAC2593.
    E97375.
    RefSeqiNP_353173.1. NC_003062.2.

    Genome annotation databases

    EnsemblBacteriaiAAK85958; AAK85958; Atu0137.
    GeneIDi1132175.
    KEGGiatu:Atu0137.
    PATRICi20809954. VBIAgrTum91616_0128.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE007869 Genomic DNA. Translation: AAK85958.1 .
    PIRi AC2593.
    E97375.
    RefSeqi NP_353173.1. NC_003062.2.

    3D structure databases

    ProteinModelPortali Q8UJ04.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 176299.Atu0137.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAK85958 ; AAK85958 ; Atu0137 .
    GeneIDi 1132175.
    KEGGi atu:Atu0137.
    PATRICi 20809954. VBIAgrTum91616_0128.

    Phylogenomic databases

    eggNOGi COG1015.
    HOGENOMi HOG000008159.
    KOi K01839.
    OMAi HAMKVGR.
    OrthoDBi EOG6R5C7J.

    Enzyme and pathway databases

    UniPathwayi UPA00087 ; UER00173 .
    BioCyci AGRO:ATU0137-MONOMER.

    Family and domain databases

    Gene3Di 3.30.70.1250. 1 hit.
    3.40.720.10. 2 hits.
    HAMAPi MF_00740. Phosphopentomut.
    InterProi IPR017849. Alkaline_Pase-like_a/b/a.
    IPR017850. Alkaline_phosphatase_core.
    IPR010045. DeoB.
    IPR006124. Metalloenzyme.
    IPR024052. Phosphopentomutase_DeoB_cap.
    [Graphical view ]
    Pfami PF01676. Metalloenzyme. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF001491. Ppentomutase. 1 hit.
    SUPFAMi SSF143856. SSF143856. 1 hit.
    SSF53649. SSF53649. 2 hits.
    TIGRFAMsi TIGR01696. deoB. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C58 / ATCC 33970.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C58 / ATCC 33970.

    Entry informationi

    Entry nameiDEOB_AGRT5
    AccessioniPrimary (citable) accession number: Q8UJ04
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 28, 2003
    Last sequence update: June 1, 2002
    Last modified: October 1, 2014
    This is version 78 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3