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Q8UJ04 (DEOB_AGRT5) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 77. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Phosphopentomutase

EC=5.4.2.7
Alternative name(s):
Phosphodeoxyribomutase
Gene names
Name:deoB
Synonyms:drm
Ordered Locus Names:Atu0137
ORF Names:AGR_C_219
OrganismAgrobacterium tumefaciens (strain C58 / ATCC 33970) [Reference proteome] [HAMAP]
Taxonomic identifier176299 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacteriumAgrobacterium tumefaciens complex

Protein attributes

Sequence length406 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Phosphotransfer between the C1 and C5 carbon atoms of pentose By similarity. HAMAP-Rule MF_00740

Catalytic activity

Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate. HAMAP-Rule MF_00740

2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate. HAMAP-Rule MF_00740

Cofactor

Binds 1 or 2 manganese ions Potential.

Pathway

Metabolic intermediate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate from D-ribose 5-phosphate (route II): step 1/3. HAMAP-Rule MF_00740

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00740.

Sequence similarities

Belongs to the phosphopentomutase family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 406406Phosphopentomutase HAMAP-Rule MF_00740
PRO_0000199805

Sites

Metal binding101Manganese By similarity
Metal binding3101Manganese By similarity
Metal binding3461Manganese By similarity
Metal binding3471Manganese By similarity
Metal binding3581Manganese By similarity

Sequences

Sequence LengthMass (Da)Tools
Q8UJ04 [UniParc].

Last modified June 1, 2002. Version 1.
Checksum: 9358AEF652AB5F38

FASTA40643,457
        10         20         30         40         50         60 
MARAFLLVLD SFGVGGAPDA ERYGDLGANT LGHIAEFCAA GAADRAGLRA GPLKLPNMCS 

        70         80         90        100        110        120 
LGLLEIARQA SGDIPAGMEP PERIFGLHGS ASEISKGKDT PSGHWEIAGT PVTFDWGYFP 

       130        140        150        160        170        180 
TEGDAFSPEL VEAICRQADI PGILGNCHAS GTEIIAALGE EHIRSGKPIC YTSSDSVFQI 

       190        200        210        220        230        240 
AAHETHFGLD RLIALCETVR KLLDPLNIGR VIARPFIGET VATFERTGNR RDFSVPPPEP 

       250        260        270        280        290        300 
TLLDRLVEAG RKVHAIGKIG DIYAHQGVTR VIKANGNAAL MDATLHAIDE AENGDLVFTN 

       310        320        330        340        350        360 
FVDFDMLYGH RRDVAGYAAA LEAFDARIPE IHRKMAPGDI ALLTADHGCD PTWRGTDHTR 

       370        380        390        400 
ERVPIMAFGP GIRSRDVGIR SSYADIGESI AHHLGIEAGS HGRSFI 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE007869 Genomic DNA. Translation: AAK85958.1.
PIRAC2593.
E97375.
RefSeqNP_353173.1. NC_003062.2.

3D structure databases

ProteinModelPortalQ8UJ04.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING176299.Atu0137.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAK85958; AAK85958; Atu0137.
GeneID1132175.
KEGGatu:Atu0137.
PATRIC20809954. VBIAgrTum91616_0128.

Phylogenomic databases

eggNOGCOG1015.
HOGENOMHOG000008159.
KOK01839.
OMAHAMKVGR.
OrthoDBEOG6R5C7J.

Enzyme and pathway databases

BioCycAGRO:ATU0137-MONOMER.
UniPathwayUPA00087; UER00173.

Family and domain databases

Gene3D3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPMF_00740. Phosphopentomut.
InterProIPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view]
PfamPF01676. Metalloenzyme. 1 hit.
[Graphical view]
PIRSFPIRSF001491. Ppentomutase. 1 hit.
SUPFAMSSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsTIGR01696. deoB. 1 hit.
ProtoNetSearch...

Entry information

Entry nameDEOB_AGRT5
AccessionPrimary (citable) accession number: Q8UJ04
Entry history
Integrated into UniProtKB/Swiss-Prot: November 28, 2003
Last sequence update: June 1, 2002
Last modified: May 14, 2014
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways