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Q8UJ04

- DEOB_AGRT5

UniProt

Q8UJ04 - DEOB_AGRT5

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Protein

Phosphopentomutase

Gene
deoB, drm, Atu0137, AGR_C_219
Organism
Agrobacterium tumefaciens (strain C58 / ATCC 33970)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Phosphotransfer between the C1 and C5 carbon atoms of pentose By similarity.UniRule annotation

Catalytic activityi

Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate.UniRule annotation
2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate.UniRule annotation

Cofactori

Binds 1 or 2 manganese ions Reviewed prediction.

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi10 – 101Manganese By similarity
Metal bindingi310 – 3101Manganese By similarity
Metal bindingi346 – 3461Manganese By similarity
Metal bindingi347 – 3471Manganese By similarity
Metal bindingi358 – 3581Manganese By similarity

GO - Molecular functioni

  1. magnesium ion binding Source: InterPro
  2. manganese ion binding Source: UniProtKB-HAMAP
  3. phosphopentomutase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. 5-phosphoribose 1-diphosphate biosynthetic process Source: UniProtKB-UniPathway
  2. cellular metabolic compound salvage Source: InterPro
  3. deoxyribonucleotide catabolic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Isomerase

Keywords - Ligandi

Manganese, Metal-binding

Enzyme and pathway databases

BioCyciAGRO:ATU0137-MONOMER.
UniPathwayiUPA00087; UER00173.

Names & Taxonomyi

Protein namesi
Recommended name:
Phosphopentomutase (EC:5.4.2.7)
Alternative name(s):
Phosphodeoxyribomutase
Gene namesi
Name:deoB
Synonyms:drm
Ordered Locus Names:Atu0137
ORF Names:AGR_C_219
OrganismiAgrobacterium tumefaciens (strain C58 / ATCC 33970)
Taxonomic identifieri176299 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacteriumAgrobacterium tumefaciens complex
ProteomesiUP000000813: Chromosome circular

Subcellular locationi

Cytoplasm By similarity UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 406406PhosphopentomutaseUniRule annotationPRO_0000199805Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi176299.Atu0137.

Structurei

3D structure databases

ProteinModelPortaliQ8UJ04.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1015.
HOGENOMiHOG000008159.
KOiK01839.
OMAiHAMKVGR.
OrthoDBiEOG6R5C7J.

Family and domain databases

Gene3Di3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPiMF_00740. Phosphopentomut.
InterProiIPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view]
PfamiPF01676. Metalloenzyme. 1 hit.
[Graphical view]
PIRSFiPIRSF001491. Ppentomutase. 1 hit.
SUPFAMiSSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsiTIGR01696. deoB. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8UJ04-1 [UniParc]FASTAAdd to Basket

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MARAFLLVLD SFGVGGAPDA ERYGDLGANT LGHIAEFCAA GAADRAGLRA    50
GPLKLPNMCS LGLLEIARQA SGDIPAGMEP PERIFGLHGS ASEISKGKDT 100
PSGHWEIAGT PVTFDWGYFP TEGDAFSPEL VEAICRQADI PGILGNCHAS 150
GTEIIAALGE EHIRSGKPIC YTSSDSVFQI AAHETHFGLD RLIALCETVR 200
KLLDPLNIGR VIARPFIGET VATFERTGNR RDFSVPPPEP TLLDRLVEAG 250
RKVHAIGKIG DIYAHQGVTR VIKANGNAAL MDATLHAIDE AENGDLVFTN 300
FVDFDMLYGH RRDVAGYAAA LEAFDARIPE IHRKMAPGDI ALLTADHGCD 350
PTWRGTDHTR ERVPIMAFGP GIRSRDVGIR SSYADIGESI AHHLGIEAGS 400
HGRSFI 406
Length:406
Mass (Da):43,457
Last modified:June 1, 2002 - v1
Checksum:i9358AEF652AB5F38
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE007869 Genomic DNA. Translation: AAK85958.1.
PIRiAC2593.
E97375.
RefSeqiNP_353173.1. NC_003062.2.

Genome annotation databases

EnsemblBacteriaiAAK85958; AAK85958; Atu0137.
GeneIDi1132175.
KEGGiatu:Atu0137.
PATRICi20809954. VBIAgrTum91616_0128.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE007869 Genomic DNA. Translation: AAK85958.1 .
PIRi AC2593.
E97375.
RefSeqi NP_353173.1. NC_003062.2.

3D structure databases

ProteinModelPortali Q8UJ04.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 176299.Atu0137.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAK85958 ; AAK85958 ; Atu0137 .
GeneIDi 1132175.
KEGGi atu:Atu0137.
PATRICi 20809954. VBIAgrTum91616_0128.

Phylogenomic databases

eggNOGi COG1015.
HOGENOMi HOG000008159.
KOi K01839.
OMAi HAMKVGR.
OrthoDBi EOG6R5C7J.

Enzyme and pathway databases

UniPathwayi UPA00087 ; UER00173 .
BioCyci AGRO:ATU0137-MONOMER.

Family and domain databases

Gene3Di 3.30.70.1250. 1 hit.
3.40.720.10. 2 hits.
HAMAPi MF_00740. Phosphopentomut.
InterProi IPR017849. Alkaline_Pase-like_a/b/a.
IPR017850. Alkaline_phosphatase_core.
IPR010045. DeoB.
IPR006124. Metalloenzyme.
IPR024052. Phosphopentomutase_DeoB_cap.
[Graphical view ]
Pfami PF01676. Metalloenzyme. 1 hit.
[Graphical view ]
PIRSFi PIRSF001491. Ppentomutase. 1 hit.
SUPFAMi SSF143856. SSF143856. 1 hit.
SSF53649. SSF53649. 2 hits.
TIGRFAMsi TIGR01696. deoB. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C58 / ATCC 33970.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C58 / ATCC 33970.

Entry informationi

Entry nameiDEOB_AGRT5
AccessioniPrimary (citable) accession number: Q8UJ04
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2003
Last sequence update: June 1, 2002
Last modified: May 14, 2014
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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