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Reviewed, UniProtKB/Swiss-Prot Q8UGH4 (PSD_AGRT5)

Last modified February 9, 2010. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Phosphatidylserine decarboxylase proenzyme
    EC=4.1.1.65
Cleaved into the following 2 chains:
    1- Recommended name:
            Phosphatidylserine decarboxylase alpha chain
    2- Recommended name:
            Phosphatidylserine decarboxylase beta chain
Gene names
Name: psd
Ordered Locus Names: Atu1063
ORF Names: AGR_C_1963
OrganismAgrobacterium tumefaciens (strain C58 / ATCC 33970) [Complete proteome] [HAMAP]
Taxonomic identifier176299 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacterium

Protein attributes

Sequence length232 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology.

General annotation (Comments)

Catalytic activity

Phosphatidyl-L-serine = phosphatidylethanolamine + CO2. HAMAP MF_00664

Cofactor

Pyruvoyl group By similarity. HAMAP MF_00664

Pathway

Phospholipid metabolism; phosphatidylethanolamine biosynthesis; phosphatidylethanolamine from CDP-diacylglycerol: step 2/2. HAMAP MF_00664

Sequence similarities

Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily.

Ontologies

Keywords
   Biological processPhospholipid biosynthesis
   LigandPyruvate
   Molecular functionDecarboxylase
Lyase
   PTMZymogen
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processphosphatidylethanolamine biosynthetic process

Inferred from electronic annotation. Source: InterPro

   Molecular functioncofactor binding

Inferred from electronic annotation. Source: InterPro

phosphatidylserine decarboxylase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 189189Phosphatidylserine decarboxylase beta chain By similarity
PRO_0000029747
Chain190 – 23243Phosphatidylserine decarboxylase alpha chain By similarity
PRO_0000029748

Sites

Site189 – 1902Cleavage (non-hydrolytic) By similarity

Amino acid modifications

Modified residue1901Pyruvic acid (Ser) By similarity

Sequences

Sequence LengthMass (Da)Tools
Q8UGH4-1 [UniParc].

Last modified July 3, 2003. Version 2.
Checksum: 04E1839361E912AD

FASTA23225,478
        10         20         30         40         50         60 
MNLFDTIRNT IVPIHKEGYV FVAAFFVASL VLGWIAEPLF WVGLVLTAWC AYFFRDPERV 

        70         80         90        100        110        120 
TPQDDDLIIS PADGKVSAVQ SVVPPLELEL GKEPMVRISV FMNVFNCHVN RAPVRGRIVN 

       130        140        150        160        170        180 
VAYRPGLFLN AEVDKASEDN ERNGLVIETS HGKVGVVQIA GMVARRIVCW VKPNEPVDAG 

       190        200        210        220        230 
ERFGLIRFGS RLDIFLPAGF EPRVSVGQTA IAGETVLAEF GSAKGPVLSR RG 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE007869 Genomic DNA. Translation: AAK86872.2.
PIRAF2707.
G97489.
RefSeqNP_354087.2.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGQ8UGH4.

Genome annotation databases

GeneID1133101.
GenomeReviewsGene locus Atu1063 in contig AE007869_GR.
KEGGatc:AGR_C_1963.
atu:Atu1063.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0688.
HOGENOMHBG541103.
OMAIFMSVFN.

Enzyme and pathway databases

BioCycATUM176299-1:ATU1063-MONOMER.

Family and domain databases

HAMAPMF_00664. PS_decarb_type3.
[Tree]
InterProIPR003817. PS_Dcarbxylase.
IPR004428. PtdSer_deCO2ase_related.
[Graphical view]
PfamPF02666. PS_Dcarbxylase. 1 hit.
[Graphical view]
TIGRFAMsTIGR00164. PS_decarb_rel. 1 hit.
ProtoNetSearch...

Entry information

Entry namePSD_AGRT5
AccessionPrimary (citable) accession number: Q8UGH4
Entry history
Integrated into UniProtKB/Swiss-Prot: July 3, 2003
Last sequence update: July 3, 2003
Last modified: February 9, 2010
This is version 38 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents