Xylose isomerase - Agrobacterium tumefaciens (strain C58 / ATCC 33970)

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Q8U7G6 (XYLA_AGRT5) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 56. History...

Clusters with 100%, 90%, 50% identity |

Documents (1) |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
Xylose isomerase
EC=5.3.1.5

Gene names

Name:	xylA
Ordered Locus Names:	Atu4483
ORF Names:	AGR_L_774

Organism

Agrobacterium tumefaciens (strain C58 / ATCC 33970)

Taxonomic identifier

176299 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Agrobacterium

Protein attributes

Sequence length	436 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	D-xylose = D-xylulose. HAMAP MF_00455
Cofactor	Binds 2 magnesium ions per subunit By similarity. HAMAP MF_00455
Subunit structure	Homotetramer By similarity. HAMAP MF_00455
Subcellular location	Cytoplasm By similarity HAMAP MF_00455.
Sequence similarities	Belongs to the xylose isomerase family.

Ontologies

Keywords
Biological process	Carbohydrate metabolism Pentose shunt Xylose metabolism
Cellular component	Cytoplasm
Ligand	Magnesium Metal-binding
Molecular function	Isomerase
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	D-xylose metabolic process Inferred from electronic annotation. Source: UniProtKB-KW pentose-phosphate shunt Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW xylose isomerase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 436

436

Xylose isomerase HAMAP MF_00455

PRO_0000195758

Sites

Active site

100

By similarity

Active site

103

By similarity

Metal binding

231

Magnesium 1 By similarity

Metal binding

267

Magnesium 1 By similarity

Metal binding

267

Magnesium 2 By similarity

Metal binding

270

Magnesium 2 By similarity

Metal binding

295

Magnesium 1 By similarity

Metal binding

306

Magnesium 2 By similarity

Metal binding

308

Magnesium 2 By similarity

Metal binding

338

Magnesium 1 By similarity

Sequences

Sequence

Length

Mass (Da)

Tools

Q8U7G6 [UniParc].

Last modified July 5, 2004. Version 2.
Checksum: 5B8759CF40D9F2E1
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FASTA

436

48,968

        10         20         30         40         50         60 
MSTGFFGDIA KIKYEGPDST NPLAFRHYNP DEIVGGKRME DHLRFAVAYW HTFTWPGGDP 

        70         80         90        100        110        120 
FGGQTFQRPW FEDTMQAAKL KADVAFEFFS LLGSPFYCFH DADVRPEGKN FAENTKNLNE 

       130        140        150        160        170        180 
IVDYFAQKQA DTGVKLLWGT ANLFSNRRFM SGAATNPDPD VFAFSAATVK TCMDATKTLG 

       190        200        210        220        230        240 
GANYVLWGGR EGYETLLNTD LSRELDQLGR FLNLVVEYKY KIGFEGTILI EPKPQEPTKH 

       250        260        270        280        290        300 
QYDYDVATVY AFLQKNGLEK EVKVNIEQGH AILAGHSFEH ELAMANAFGI FGSIDMNRND 

       310        320        330        340        350        360 
YQSGWDTDQF PNNVPEMALA YYHVLAGGGF KNGGTNFDSK LRRQSLDPQD LLIGHIGGMD 

       370        380        390        400        410        420 
CCARGLKAAA KMIEDGALSK PLSERYAKWD SPEAQKMLRG ELKLEEIAAL VERDDINPEP 

       430 
KPGRQEYLEN VVNRYV

« Hide

References

[1]	"The genome of the natural genetic engineer Agrobacterium tumefaciens C58." Wood D.W., Setubal J.C., Kaul R., Monks D.E., Kitajima J.P., Okura V.K., Zhou Y., Chen L., Wood G.E., Almeida N.F. Jr., Woo L., Chen Y., Paulsen I.T., Eisen J.A., Karp P.D., Bovee D. Sr., Chapman P., Clendenning J. Nester E.W. Science 294:2317-2323(2001) [PubMed: 11743193] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C58 / ATCC 33970.
[2]	"Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58." Goodner B., Hinkle G., Gattung S., Miller N., Blanchard M., Qurollo B., Goldman B.S., Cao Y., Askenazi M., Halling C., Mullin L., Houmiel K., Gordon J., Vaudin M., Iartchouk O., Epp A., Liu F., Wollam C. Slater S. Science 294:2323-2328(2001) [PubMed: 11743194] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C58 / ATCC 33970.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE007870 Genomic DNA. Translation: AAK88959.2.
PIR	AG3107. E98179.
RefSeq	NP_356174.2. NC_003063.2.
3D structure databases
ProteinModelPortal	Q8U7G6.
SMR	Q8U7G6. Positions 4-436.
ModBase	Search...
Protein-protein interaction databases
STRING	Q8U7G6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	1136357.
GenomeReviews	Gene locus Atu4483 in contig AE007870_GR.
KEGG	atu:Atu4483.
PATRIC	20818393. VBIAgrTum91616_4292.
Phylogenomic databases
eggNOG	COG2115.
HOGENOM	HBG297199.
OMA	LLGWDTD.
PhylomeDB	Q8U7G6.
ProtClustDB	PRK05474.
Enzyme and pathway databases
BioCyc	ATUM176299-1:ATU4483-MONOMER.
Family and domain databases
HAMAP	MF_00455. Xylose_isom_A. [Tree]
InterPro	IPR013022. Xyl_isomerase-like_TIM-brl. IPR012307. Xyl_isomerase_TIM-brl. IPR013452. Xylose_isom_bac. IPR001998. Xylose_isomerase. [Graphical view]
Gene3D	G3DSA:3.20.20.150. Xyl_isomerase-like_TIM-brl. 1 hit.
KO	K01805.
Pfam	PF01261. AP_endonuc_2. 1 hit. [Graphical view]
PRINTS	PR00688. XYLOSISMRASE.
SUPFAM	SSF51658. Xyl_isomerase-like_TIM-brl. 1 hit.
TIGRFAMs	TIGR02630. Xylose_isom_A. 1 hit.
PROSITE	PS51415. XYLOSE_ISOMERASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

XYLA_AGRT5

Accession

Primary (citable) accession number: Q8U7G6
Secondary accession number(s): Q7CV26

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 19, 2004
Last sequence update:	July 5, 2004
Last modified:	January 25, 2012
This is version 56 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequence annotation (Features)

Molecule processing

Sites

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protein-protein interaction databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Enzyme and pathway databases

Family and domain databases

Entry information

Relevant documents