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Protein

50S ribosomal protein L39e

Gene

rpl39e

Organism
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L39eUniRule annotation
Alternative name(s):
Large ribosomal subunit protein eL39
Gene namesi
Name:rpl39eUniRule annotation
Ordered Locus Names:PF0379
OrganismiPyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Taxonomic identifieri186497 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000001013 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001270581 – 5150S ribosomal protein L39eAdd BLAST51

Proteomic databases

PRIDEiQ8U3S6.

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.1 Publication

Protein-protein interaction databases

STRINGi186497.PF0379.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V4Nelectron microscopy9.00f1-51[»]
4V6Uelectron microscopy6.60Bf1-51[»]
ProteinModelPortaliQ8U3S6.
SMRiQ8U3S6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the eukaryotic ribosomal protein eL39 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04177. Archaea.
COG2167. LUCA.
HOGENOMiHOG000230627.
KOiK02924.
OMAiMTHPKRR.

Family and domain databases

Gene3Di1.10.1620.10. 1 hit.
HAMAPiMF_00629. Ribosomal_L39e. 1 hit.
InterProiView protein in InterPro
IPR000077. Ribosomal_L39.
IPR020083. Ribosomal_L39_CS.
IPR023626. Ribosomal_L39e_dom.
PANTHERiPTHR19970. PTHR19970. 1 hit.
PfamiView protein in Pfam
PF00832. Ribosomal_L39. 1 hit.
SUPFAMiSSF48662. SSF48662. 1 hit.
PROSITEiView protein in PROSITE
PS00051. RIBOSOMAL_L39E. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8U3S6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARNKPLAKK LRLAKALKQN RRVPVWVIVK TNRRVLTHPK RRYWRRTKLK

E
Length:51
Mass (Da):6,304
Last modified:June 1, 2002 - v1
Checksum:i5377B295B06553F3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009950 Genomic DNA. Translation: AAL80503.1.
RefSeqiWP_011011493.1. NC_003413.1.

Genome annotation databases

EnsemblBacteriaiAAL80503; AAL80503; PF0379.
GeneIDi28493731.
KEGGipfu:PF0379.
PATRICifig|186497.12.peg.394.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL39_PYRFU
AccessioniPrimary (citable) accession number: Q8U3S6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 28, 2003
Last sequence update: June 1, 2002
Last modified: June 7, 2017
This is version 71 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families