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Protein

Thermostable carboxypeptidase 1

Gene

PF0456

Organism
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues, but not Pro, Gly, Asp and Glu.1 Publication

Catalytic activityi

Release of a C-terminal amino acid with broad specificity, except for -Pro.1 Publication

Cofactori

Co2+2 Publications, Mn2+2 PublicationsNote: Binds 1 cobalt ion per subunit. Can also utilize Mn2+ (in vitro). Is not active with zinc ions.2 Publications

Enzyme regulationi

EDTA and DTT reversibly abolish carboxypeptidase activity.1 Publication

pH dependencei

Optimum pH is 6.2-6.6.1 Publication

Temperature dependencei

Optimum temperature is 90-100 degrees Celsius.1 Publication

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi269 – 2691Cobalt; catalytic1 Publication
Active sitei270 – 2701Proton donor/acceptorBy similarity
Metal bindingi273 – 2731Cobalt; catalytic1 Publication
Metal bindingi299 – 2991Cobalt1 Publication

GO - Molecular functioni

  • cobalt ion binding Source: UniProtKB
  • metallocarboxypeptidase activity Source: UniProtKB

GO - Biological processi

  • proteolysis Source: UniProtKB
Complete GO annotation...

Keywords - Molecular functioni

Carboxypeptidase, Hydrolase, Metalloprotease, Protease

Keywords - Ligandi

Cobalt, Metal-binding

Enzyme and pathway databases

BRENDAi3.4.17.B5. 5243.

Protein family/group databases

MEROPSiM32.002.

Names & Taxonomyi

Protein namesi
Recommended name:
Thermostable carboxypeptidase 1 (EC:3.4.17.19)
Alternative name(s):
Carboxypeptidase Pfu
Short name:
PfuCP
Gene namesi
Ordered Locus Names:PF0456
OrganismiPyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Taxonomic identifieri186497 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000001013 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 499499Thermostable carboxypeptidase 1PRO_0000428834Add
BLAST

Proteomic databases

PRIDEiQ8U3L0.

Interactioni

Subunit structurei

Homodimer.2 Publications

Protein-protein interaction databases

STRINGi186497.PF0456.

Structurei

Secondary structure

1
499
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi8 – 3629Combined sources
Helixi40 – 423Combined sources
Helixi43 – 6119Combined sources
Helixi64 – 7411Combined sources
Helixi81 – 9919Combined sources
Helixi102 – 12423Combined sources
Helixi128 – 1303Combined sources
Helixi132 – 14918Combined sources
Helixi155 – 1639Combined sources
Helixi169 – 19224Combined sources
Helixi201 – 2033Combined sources
Helixi209 – 22315Combined sources
Turni228 – 2303Combined sources
Beta strandi231 – 2355Combined sources
Beta strandi241 – 2455Combined sources
Beta strandi248 – 2536Combined sources
Helixi261 – 27818Combined sources
Helixi282 – 2843Combined sources
Helixi295 – 30612Combined sources
Turni307 – 3115Combined sources
Helixi313 – 32614Combined sources
Helixi328 – 3325Combined sources
Helixi335 – 3428Combined sources
Helixi351 – 3533Combined sources
Turni356 – 3583Combined sources
Helixi359 – 37517Combined sources
Helixi380 – 3823Combined sources
Helixi383 – 39513Combined sources
Helixi402 – 4043Combined sources
Turni405 – 4073Combined sources
Helixi411 – 4144Combined sources
Helixi421 – 44020Combined sources
Helixi444 – 4507Combined sources
Helixi454 – 46310Combined sources
Helixi465 – 4673Combined sources
Helixi473 – 4819Combined sources
Helixi488 – 49811Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1K9XX-ray2.30A/B/C/D1-499[»]
1KA2X-ray2.20A1-499[»]
1KA4X-ray3.00A1-499[»]
ProteinModelPortaliQ8U3L0.
SMRiQ8U3L0. Positions 3-499.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8U3L0.

Family & Domainsi

Sequence similaritiesi

Belongs to the peptidase M32 family.Curated

Phylogenomic databases

eggNOGiarCOG04247. Archaea.
COG2317. LUCA.
HOGENOMiHOG000040803.
KOiK01299.
OMAiEFGHALY.

Family and domain databases

InterProiIPR001333. Peptidase_M32.
[Graphical view]
PfamiPF02074. Peptidase_M32. 1 hit.
[Graphical view]
PIRSFiPIRSF006615. Zn_crbxpep_Taq. 1 hit.
PRINTSiPR00998. CRBOXYPTASET.

Sequencei

Sequence statusi: Complete.

Q8U3L0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEEVFQNETI KQILAKYRRI WAIGHAQSVL GWDLEVNMPK EGILERSVAQ
60 70 80 90 100
GELSVLSHEL LLHPEFVNLV EKAKGLENLN EYERGIVRVL DRSIRIARAF
110 120 130 140 150
PPEFIREVSE TTSLATKAWE EAKAKDDFSK FEPWLDKIIS LAKRAAEYLG
160 170 180 190 200
YEEEPYDALL DLYEEGLRTR DVEKMFEVLE KKLKPLLDKI LEEGKVPREH
210 220 230 240 250
PLEKEKYERE WMERVNLWIL QKFGFPLGTR ARLDVSAHPF TTEFGIRDVR
260 270 280 290 300
ITTRYEGYDF RRTILSTVHE FGHALYELQQ DERFMFTPIA GGVSLGIHES
310 320 330 340 350
QSRFWENIIG RSKEFVELIY PVLKENLPFM SNYTPEDVYL YFNIVRPDFI
360 370 380 390 400
RTEADVVTYN FHILLRFKLE RLMVSEEIKA KDLPEMWNDE MERLLGIRPR
410 420 430 440 450
KYSEGILQDI HWAHGSIGYF PTYTIGTLLS AQLYYHIKKD IPDFEEKVAK
460 470 480 490
AEFDPIKAWL REKIHRWGSI YPPKELLKKA IGEDMDAEYF VRWVKEKYL
Length:499
Mass (Da):59,043
Last modified:June 1, 2002 - v1
Checksum:i627A8347CD899BC0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009950 Genomic DNA. Translation: AAL80580.1.
RefSeqiWP_011011573.1. NC_003413.1.

Genome annotation databases

EnsemblBacteriaiAAL80580; AAL80580; PF0456.
GeneIDi1468297.
KEGGipfu:PF0456.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009950 Genomic DNA. Translation: AAL80580.1.
RefSeqiWP_011011573.1. NC_003413.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1K9XX-ray2.30A/B/C/D1-499[»]
1KA2X-ray2.20A1-499[»]
1KA4X-ray3.00A1-499[»]
ProteinModelPortaliQ8U3L0.
SMRiQ8U3L0. Positions 3-499.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi186497.PF0456.

Protein family/group databases

MEROPSiM32.002.

Proteomic databases

PRIDEiQ8U3L0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAL80580; AAL80580; PF0456.
GeneIDi1468297.
KEGGipfu:PF0456.

Phylogenomic databases

eggNOGiarCOG04247. Archaea.
COG2317. LUCA.
HOGENOMiHOG000040803.
KOiK01299.
OMAiEFGHALY.

Enzyme and pathway databases

BRENDAi3.4.17.B5. 5243.

Miscellaneous databases

EvolutionaryTraceiQ8U3L0.

Family and domain databases

InterProiIPR001333. Peptidase_M32.
[Graphical view]
PfamiPF02074. Peptidase_M32. 1 hit.
[Graphical view]
PIRSFiPIRSF006615. Zn_crbxpep_Taq. 1 hit.
PRINTSiPR00998. CRBOXYPTASET.
ProtoNetiSearch...

Entry informationi

Entry nameiCBP1_PYRFU
AccessioniPrimary (citable) accession number: Q8U3L0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 16, 2014
Last sequence update: June 1, 2002
Last modified: January 20, 2016
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Peptidase families
    Classification of peptidase families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.