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Protein

Ribosome biogenesis protein Nop10

Gene

nop10

Organism
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein
Biological processRibosome biogenesis, rRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome biogenesis protein Nop10
Gene namesi
Name:nop10
Ordered Locus Names:PF1141
OrganismiPyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Taxonomic identifieri186497 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001490241 – 60Ribosome biogenesis protein Nop10Add BLAST60

Proteomic databases

PRIDEiQ8U1R4

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
truBQ7LWY06EBI-9025188,EBI-9025178

Protein-protein interaction databases

DIPiDIP-48527N
IntActiQ8U1R4, 3 interactors
STRINGi186497.PF1141

Structurei

Secondary structure

160
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Turni9 – 11Combined sources3
Beta strandi14 – 19Combined sources6
Turni21 – 23Combined sources3
Beta strandi28 – 31Combined sources4
Helixi42 – 53Combined sources12

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2EY4X-ray2.11E/F1-55[»]
2HVYX-ray2.30C1-60[»]
2RFKX-ray2.87B3-55[»]
3HAXX-ray2.11C1-60[»]
3HAYX-ray4.99C1-60[»]
3HJWX-ray2.35B3-55[»]
3HJYX-ray3.65B3-55[»]
3LWOX-ray2.86B1-60[»]
3LWPX-ray2.50B1-60[»]
3LWQX-ray2.68B1-60[»]
3LWRX-ray2.20B1-60[»]
3LWVX-ray2.50B1-60[»]
3MQKX-ray2.80B4-55[»]
ProteinModelPortaliQ8U1R4
SMRiQ8U1R4
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8U1R4

Family & Domainsi

Sequence similaritiesi

Belongs to the NOP10 family.Curated

Phylogenomic databases

eggNOGiarCOG00906 Archaea
COG2260 LUCA
HOGENOMiHOG000224954
KOiK11130
OMAiFRIRKCP
OrthoDBiPOG093Z0D4P

Family and domain databases

Gene3Di2.20.28.40, 1 hit
HAMAPiMF_00803 Nop10, 1 hit
InterProiView protein in InterPro
IPR007264 H/ACA_rnp_Nop10
IPR036756 H/ACA_rnp_Nop10_sf
IPR023532 Nop10_arc-typ
PANTHERiPTHR13305 PTHR13305, 1 hit
PfamiView protein in Pfam
PF04135 Nop10p, 1 hit
SUPFAMiSSF144210 SSF144210, 1 hit

Sequencei

Sequence statusi: Complete.

Q8U1R4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRFRIRKCPK CGRYTLKEVC PVCGEKTKVA HPPRFSPEDP YGEYRRRWKR
60
EVLGIGRKEK
Length:60
Mass (Da):7,224
Last modified:June 1, 2002 - v1
Checksum:iAD087B8BCAA7214B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009950 Genomic DNA Translation: AAL81265.1
RefSeqiWP_011012281.1, NC_003413.1

Genome annotation databases

EnsemblBacteriaiAAL81265; AAL81265; PF1141
GeneIDi1469010
KEGGipfu:PF1141
PATRICifig|186497.12.peg.1202

Entry informationi

Entry nameiNOP10_PYRFU
AccessioniPrimary (citable) accession number: Q8U1R4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: June 1, 2002
Last modified: May 23, 2018
This is version 82 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

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