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Protein

UPF0271 protein PF1272

Gene

PF1272

Organism
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0271 protein PF1272UniRule annotation
Gene namesi
Ordered Locus Names:PF1272
OrganismiPyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Taxonomic identifieri186497 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000001013 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 255255UPF0271 protein PF1272PRO_0000185065Add
BLAST

Proteomic databases

PRIDEiQ8U1D7.

Interactioni

Protein-protein interaction databases

STRINGi186497.PF1272.

Structurei

3D structure databases

ProteinModelPortaliQ8U1D7.
SMRiQ8U1D7. Positions 1-254.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0271 (lamB) family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG05810. Archaea.
COG1540. LUCA.
HOGENOMiHOG000237330.
KOiK07160.
OMAiAQVGYRD.

Family and domain databases

HAMAPiMF_00691. UPF0271.
InterProiIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR005501. UPF0271_LamB_YcsF.
[Graphical view]
PfamiPF03746. LamB_YcsF. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8U1D7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKVDLNSDLG ESFGRYKLGL DDEVMKYITS ANVACGWHAG DPLVMRKTVR
60 70 80 90 100
LAKKNNVQVG AHPGYPDLMG FGRRYMKLTP EEARNYILYQ IGALYAFVKA
110 120 130 140 150
EGLELQHVKP HGALYNAMVK EEDLARAVIE GILDFDKRLI VVTLAGSRVV
160 170 180 190 200
EIAREMGARV AQEGFADRAY NPDGTLVPRS RPGAVIEDKE EIAERVISMV
210 220 230 240 250
KDGGIRAING EWIELEVDTI CVHGDNPKAV EITAYIRRRL EEEGVKVLPM

GDFIK
Length:255
Mass (Da):28,402
Last modified:June 1, 2002 - v1
Checksum:i276185EB167FA766
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009950 Genomic DNA. Translation: AAL81396.1.
RefSeqiWP_011012416.1. NC_003413.1.

Genome annotation databases

EnsemblBacteriaiAAL81396; AAL81396; PF1272.
GeneIDi1469145.
KEGGipfu:PF1272.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009950 Genomic DNA. Translation: AAL81396.1.
RefSeqiWP_011012416.1. NC_003413.1.

3D structure databases

ProteinModelPortaliQ8U1D7.
SMRiQ8U1D7. Positions 1-254.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi186497.PF1272.

Proteomic databases

PRIDEiQ8U1D7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAL81396; AAL81396; PF1272.
GeneIDi1469145.
KEGGipfu:PF1272.

Phylogenomic databases

eggNOGiarCOG05810. Archaea.
COG1540. LUCA.
HOGENOMiHOG000237330.
KOiK07160.
OMAiAQVGYRD.

Family and domain databases

HAMAPiMF_00691. UPF0271.
InterProiIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR005501. UPF0271_LamB_YcsF.
[Graphical view]
PfamiPF03746. LamB_YcsF. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences."
    Maeder D.L., Weiss R.B., Dunn D.M., Cherry J.L., Gonzalez J.M., DiRuggiero J., Robb F.T.
    Genetics 152:1299-1305(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43587 / DSM 3638 / JCM 8422 / Vc1.

Entry informationi

Entry nameiY1272_PYRFU
AccessioniPrimary (citable) accession number: Q8U1D7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 4, 2003
Last sequence update: June 1, 2002
Last modified: November 11, 2015
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.