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Protein
Submitted name:

Small nucleolar rnp gar1-like protein

Gene

PF1791

Organism
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Small nucleolar rnp gar1-like proteinImported
Gene namesi
Ordered Locus Names:PF1791Imported
OrganismiPyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)Imported
Taxonomic identifieri186497 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000001013 Componenti: Chromosome

PTM / Processingi

Proteomic databases

PRIDEiQ8U029.

Interactioni

Protein-protein interaction databases

DIPiDIP-60413N.
STRINGi186497.PF1791.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2EY4X-ray2.11C/D1-82[»]
2HVYX-ray2.30B1-104[»]
2RFKX-ray2.87C8-81[»]
3HAYX-ray4.99B1-104[»]
3MQKX-ray2.80C8-82[»]
ProteinModelPortaliQ8U029.
SMRiQ8U029. Positions 8-82.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8U029.

Family & Domainsi

Phylogenomic databases

eggNOGiarCOG02466. Archaea.
COG3277. LUCA.
HOGENOMiHOG000224168.
KOiK07569.
OMAiFLIVRTN.

Family and domain databases

InterProiIPR007504. H/ACA_rnp_Gar1/Naf1.
IPR020321. H/ACA_rnp_Gar1_arc.
IPR009000. Transl_B-barrel.
[Graphical view]
PfamiPF04410. Gar1. 1 hit.
[Graphical view]
ProDomiPD064583. UPF_MJ0782.1/MTH886. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50447. SSF50447. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8U029-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEKQGEKMKR LGKVLHYAKQ GFLIVRTNWV PSLNDRVVDK RLQFVGIVKD
60 70 80 90 100
VFGPVKMPYV AIKPKVSNPE IYVGEVLYVD ERKRKESPKK NKEKRMKKKK

RLNR
Length:104
Mass (Da):12,311
Last modified:June 1, 2002 - v1
Checksum:iEF0A25A67B14687C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009950 Genomic DNA. Translation: AAL81915.1.

Genome annotation databases

EnsemblBacteriaiAAL81915; AAL81915; PF1791.
KEGGipfu:PF1791.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009950 Genomic DNA. Translation: AAL81915.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2EY4X-ray2.11C/D1-82[»]
2HVYX-ray2.30B1-104[»]
2RFKX-ray2.87C8-81[»]
3HAYX-ray4.99B1-104[»]
3MQKX-ray2.80C8-82[»]
ProteinModelPortaliQ8U029.
SMRiQ8U029. Positions 8-82.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-60413N.
STRINGi186497.PF1791.

Proteomic databases

PRIDEiQ8U029.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAL81915; AAL81915; PF1791.
KEGGipfu:PF1791.

Phylogenomic databases

eggNOGiarCOG02466. Archaea.
COG3277. LUCA.
HOGENOMiHOG000224168.
KOiK07569.
OMAiFLIVRTN.

Miscellaneous databases

EvolutionaryTraceiQ8U029.

Family and domain databases

InterProiIPR007504. H/ACA_rnp_Gar1/Naf1.
IPR020321. H/ACA_rnp_Gar1_arc.
IPR009000. Transl_B-barrel.
[Graphical view]
PfamiPF04410. Gar1. 1 hit.
[Graphical view]
ProDomiPD064583. UPF_MJ0782.1/MTH886. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50447. SSF50447. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences."
    Maeder D.L., Weiss R.B., Dunn D.M., Cherry J.L., Gonzalez J.M., DiRuggiero J., Robb F.T.
    Genetics 152:1299-1305(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43587 / DSM 3638 / JCM 8422 / Vc1Imported.
  2. "Crystal structure of a Cbf5-Nop10-Gar1 complex and implications in RNA-guided pseudouridylation and dyskeratosis congenita."
    Rashid R., Liang B., Baker D.L., Youssef O.A., He Y., Phipps K., Terns R.M., Terns M.P., Li H.
    Mol. Cell 21:249-260(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.11 ANGSTROMS) OF 1-82.
  3. "Crystal structure of an H/ACA box ribonucleoprotein particle."
    Li L., Ye K.
    Nature 443:302-307(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS).
  4. "Substrate RNA positioning in the archaeal H/ACA ribonucleoprotein complex."
    Liang B., Xue S., Terns R.M., Terns M.P., Li H.
    Nat. Struct. Mol. Biol. 14:1189-1195(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.87 ANGSTROMS) OF 8-81.
  5. "Structural mechanism of substrate RNA recruitment in H/ACA RNA-guided pseudouridine synthase."
    Duan J., Li L., Lu J., Wang W., Ye K.
    Mol. Cell 34:427-439(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (4.99 ANGSTROMS).
  6. "Structural and functional evidence of high specificity of Cbf5 for ACA trinucleotide."
    Zhou J., Liang B., Li H.
    RNA 17:244-250(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.80 ANGSTROMS) OF 8-82.

Entry informationi

Entry nameiQ8U029_PYRFU
AccessioniPrimary (citable) accession number: Q8U029
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2002
Last sequence update: June 1, 2002
Last modified: December 9, 2015
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.