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Protein

50S ribosomal protein L6

Gene

rpl6

Organism
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L6UniRule annotation
Alternative name(s):
Large ribosomal subunit protein uL6
Gene namesi
Name:rpl6UniRule annotation
Ordered Locus Names:PF1808
OrganismiPyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Taxonomic identifieri186497 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000001013 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002609961 – 18450S ribosomal protein L6Add BLAST184

Proteomic databases

PRIDEiQ8U015

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation1 Publication

Protein-protein interaction databases

STRINGi186497.PF1808

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V4Nelectron microscopy9.00F1-184[»]
4V6Uelectron microscopy6.60BF1-184[»]
ProteinModelPortaliQ8U015
SMRiQ8U015
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL6 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04090 Archaea
COG0097 LUCA
HOGENOMiHOG000039905
KOiK02933
OMAiVFQDGIY
OrthoDBiPOG093Z0CBF

Family and domain databases

Gene3Di3.90.930.12, 2 hits
HAMAPiMF_01365_A Ribosomal_L6_A, 1 hit
InterProiView protein in InterPro
IPR000702 Ribosomal_L6
IPR020040 Ribosomal_L6_a/b-dom
IPR036789 Ribosomal_L6_a/b-dom_sf
IPR002359 Ribosomal_L6_CS2
IPR019907 Ribosomal_L6P_arc
PANTHERiPTHR11655 PTHR11655, 1 hit
PfamiView protein in Pfam
PF00347 Ribosomal_L6, 2 hits
PIRSFiPIRSF002162 Ribosomal_L6, 1 hit
SUPFAMiSSF56053 SSF56053, 2 hits
TIGRFAMsiTIGR03653 uL6_arch, 1 hit
PROSITEiView protein in PROSITE
PS00700 RIBOSOMAL_L6_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q8U015-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPVDAWIREE VEIPEGVEVT VEGYKVKVKG PKGELEREFF WPGIQIFTED
60 70 80 90 100
GNVVIYKDFP RRKDVAIART FAAHIRNMIK GVTEGFTYKL KVVYSHFPIS
110 120 130 140 150
VKVQGDEVII ENFLGEKAPR KAKILPGVTV KVRGQEIIVE GIDKEAVGQT
160 170 180
AANIEQATRI TKWDRRIFQD GIYIVEKAGK PITF
Length:184
Mass (Da):20,860
Last modified:June 1, 2002 - v1
Checksum:iD04668790BE75787
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009950 Genomic DNA Translation: AAL81932.1
RefSeqiWP_011012949.1, NC_003413.1

Genome annotation databases

EnsemblBacteriaiAAL81932; AAL81932; PF1808
GeneIDi1469687
KEGGipfu:PF1808
PATRICifig|186497.12.peg.1879

Similar proteinsi

Entry informationi

Entry nameiRL6_PYRFU
AccessioniPrimary (citable) accession number: Q8U015
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: June 1, 2002
Last modified: May 23, 2018
This is version 87 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families
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Main funding by: National Institutes of Health