Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

30S ribosomal protein S17

Gene

rps17

Organism
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S17UniRule annotation
Alternative name(s):
Small ribosomal subunit protein uS17
Gene namesi
Name:rps17UniRule annotation
Ordered Locus Names:PF1815
OrganismiPyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Taxonomic identifieri186497 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000001013 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002326151 – 11330S ribosomal protein S17Add BLAST113

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit.UniRule annotation1 Publication

Protein-protein interaction databases

STRINGi186497.PF1815.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V4Nelectron microscopy9.00R1-113[»]
4V6Uelectron microscopy6.60AR1-113[»]
5JB3electron microscopy5.34R1-113[»]
5JBHelectron microscopy5.34R1-113[»]
ProteinModelPortaliQ8U008.
SMRiQ8U008.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uS17 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04096. Archaea.
COG0186. LUCA.
HOGENOMiHOG000231341.
KOiK02961.
OMAiKKYERYE.
OrthoDBiPOG093Z0IP7.

Family and domain databases

HAMAPiMF_01345_A. Ribosomal_S17_A. 1 hit.
InterProiView protein in InterPro
IPR012340. NA-bd_OB-fold.
IPR000266. Ribosomal_S17/S11.
IPR028333. Ribosomal_S17_arc-typ.
IPR019978. Ribosomal_S17_archaeal.
IPR019979. Ribosomal_S17_CS.
PANTHERiPTHR10744. PTHR10744. 1 hit.
PTHR10744:SF13. PTHR10744:SF13. 1 hit.
PfamiView protein in Pfam
PF00366. Ribosomal_S17. 1 hit.
PRINTSiPR00973. RIBOSOMALS17.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD001295. Ribosomal_S17. 1 hit.
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR03630. uS17_arch. 1 hit.
PROSITEiView protein in PROSITE
PS00056. RIBOSOMAL_S17. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8U008-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMRDIGLRVQ PPAEKCDDPK CPWHGNLKIH GRVFEGIVVS DKPRKTVTVE
60 70 80 90 100
RQYYFYLNKY ERYELRRSKI HAHNPPCINA KVGDKVLIAE TRPLSKTKHF
110
VVVAVLERAE ERR
Length:113
Mass (Da):13,268
Last modified:June 1, 2002 - v1
Checksum:i6FA03634D540849D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009950 Genomic DNA. Translation: AAL81939.1.
RefSeqiWP_011012956.1. NC_003413.1.

Genome annotation databases

EnsemblBacteriaiAAL81939; AAL81939; PF1815.
GeneIDi1469694.
KEGGipfu:PF1815.
PATRICifig|186497.12.peg.1886.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009950 Genomic DNA. Translation: AAL81939.1.
RefSeqiWP_011012956.1. NC_003413.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V4Nelectron microscopy9.00R1-113[»]
4V6Uelectron microscopy6.60AR1-113[»]
5JB3electron microscopy5.34R1-113[»]
5JBHelectron microscopy5.34R1-113[»]
ProteinModelPortaliQ8U008.
SMRiQ8U008.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi186497.PF1815.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAL81939; AAL81939; PF1815.
GeneIDi1469694.
KEGGipfu:PF1815.
PATRICifig|186497.12.peg.1886.

Phylogenomic databases

eggNOGiarCOG04096. Archaea.
COG0186. LUCA.
HOGENOMiHOG000231341.
KOiK02961.
OMAiKKYERYE.
OrthoDBiPOG093Z0IP7.

Family and domain databases

HAMAPiMF_01345_A. Ribosomal_S17_A. 1 hit.
InterProiView protein in InterPro
IPR012340. NA-bd_OB-fold.
IPR000266. Ribosomal_S17/S11.
IPR028333. Ribosomal_S17_arc-typ.
IPR019978. Ribosomal_S17_archaeal.
IPR019979. Ribosomal_S17_CS.
PANTHERiPTHR10744. PTHR10744. 1 hit.
PTHR10744:SF13. PTHR10744:SF13. 1 hit.
PfamiView protein in Pfam
PF00366. Ribosomal_S17. 1 hit.
PRINTSiPR00973. RIBOSOMALS17.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD001295. Ribosomal_S17. 1 hit.
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR03630. uS17_arch. 1 hit.
PROSITEiView protein in PROSITE
PS00056. RIBOSOMAL_S17. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRS17_PYRFU
AccessioniPrimary (citable) accession number: Q8U008
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 18, 2006
Last sequence update: June 1, 2002
Last modified: June 7, 2017
This is version 93 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.