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Protein

50S ribosomal protein L35Ae

Gene

rpl35ae

Organism
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L35Ae
Gene namesi
Name:rpl35ae
Ordered Locus Names:PF1872
OrganismiPyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Taxonomic identifieri186497 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000001013 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 878750S ribosomal protein L35AePRO_0000192812Add
BLAST

Proteomic databases

PRIDEiQ8TZV6.

Interactioni

Protein-protein interaction databases

STRINGi186497.PF1872.

Structurei

Secondary structure

1
87
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi4 – 118Combined sources
Beta strandi14 – 185Combined sources
Beta strandi21 – 277Combined sources
Helixi32 – 387Combined sources
Beta strandi42 – 454Combined sources
Beta strandi53 – 6513Combined sources
Beta strandi67 – 704Combined sources
Beta strandi76 – 783Combined sources
Beta strandi83 – 853Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1SQRNMR-A1-87[»]
2LP6NMR-A1-87[»]
4V6Uelectron microscopy6.60Bc1-87[»]
ProteinModelPortaliQ8TZV6.
SMRiQ8TZV6. Positions 1-87.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8TZV6.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L35Ae family.Curated

Phylogenomic databases

eggNOGiarCOG04304. Archaea.
COG2451. LUCA.
HOGENOMiHOG000195636.
KOiK02917.
OMAiGKIVRVH.

Family and domain databases

HAMAPiMF_00573. Ribosomal_L35Ae.
InterProiIPR001780. Ribosomal_L35A.
IPR023518. Ribosomal_L35Ae_arc.
IPR018266. Ribosomal_L35Ae_CS.
IPR009000. Transl_B-barrel.
[Graphical view]
PANTHERiPTHR10902. PTHR10902. 1 hit.
PfamiPF01247. Ribosomal_L35Ae. 1 hit.
[Graphical view]
ProDomiPD012670. Ribosomal_L35Ae. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50447. SSF50447. 1 hit.
PROSITEiPS01105. RIBOSOMAL_L35AE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8TZV6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRIKGVVLSY RRSKENQHNN VMIIKPLDVN SREEASKLIG RLVLWKSPSG
60 70 80
KILKGKIVRV HGTKGAVRAR FEKGLPGQAL GDYVEIV
Length:87
Mass (Da):9,736
Last modified:June 1, 2002 - v1
Checksum:iF5C425AAA3A09247
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009950 Genomic DNA. Translation: AAL81996.1.
RefSeqiWP_011013011.1. NC_003413.1.

Genome annotation databases

EnsemblBacteriaiAAL81996; AAL81996; PF1872.
GeneIDi1469751.
KEGGipfu:PF1872.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009950 Genomic DNA. Translation: AAL81996.1.
RefSeqiWP_011013011.1. NC_003413.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1SQRNMR-A1-87[»]
2LP6NMR-A1-87[»]
4V6Uelectron microscopy6.60Bc1-87[»]
ProteinModelPortaliQ8TZV6.
SMRiQ8TZV6. Positions 1-87.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi186497.PF1872.

Proteomic databases

PRIDEiQ8TZV6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAL81996; AAL81996; PF1872.
GeneIDi1469751.
KEGGipfu:PF1872.

Phylogenomic databases

eggNOGiarCOG04304. Archaea.
COG2451. LUCA.
HOGENOMiHOG000195636.
KOiK02917.
OMAiGKIVRVH.

Miscellaneous databases

EvolutionaryTraceiQ8TZV6.

Family and domain databases

HAMAPiMF_00573. Ribosomal_L35Ae.
InterProiIPR001780. Ribosomal_L35A.
IPR023518. Ribosomal_L35Ae_arc.
IPR018266. Ribosomal_L35Ae_CS.
IPR009000. Transl_B-barrel.
[Graphical view]
PANTHERiPTHR10902. PTHR10902. 1 hit.
PfamiPF01247. Ribosomal_L35Ae. 1 hit.
[Graphical view]
ProDomiPD012670. Ribosomal_L35Ae. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50447. SSF50447. 1 hit.
PROSITEiPS01105. RIBOSOMAL_L35AE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences."
    Maeder D.L., Weiss R.B., Dunn D.M., Cherry J.L., Gonzalez J.M., DiRuggiero J., Robb F.T.
    Genetics 152:1299-1305(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43587 / DSM 3638 / JCM 8422 / Vc1.

Entry informationi

Entry nameiRL35A_PYRFU
AccessioniPrimary (citable) accession number: Q8TZV6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 26, 2002
Last sequence update: June 1, 2002
Last modified: November 11, 2015
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.