Reviewed, UniProtKB/Swiss-Prot Q8TWG3 (PUR2_METKA)

Names and origin

Protein names

Recommended name:
    Phosphoribosylamine--glycine ligase
    EC=6.3.4.13
Alternative name(s):
    GARS
    Glycinamide ribonucleotide synthetase
    Phosphoribosylglycinamide synthetase

Gene names

Name:	purD
Ordered Locus Names:	MK1071

Organism

Methanopyrus kandleri [Complete proteome] [HAMAP]

Taxonomic identifier

2320 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Methanopyri › Methanopyrales › Methanopyraceae › Methanopyrus

Protein attributes

Sequence length	449 AA.
Sequence status	Complete.
Protein existence	Inferred from homology.

General annotation (Comments)

Catalytic activity	ATP + 5-phospho-D-ribosylamine + glycine = ADP + phosphate + N(1)-(5-phospho-D-ribosyl)glycinamide. HAMAP MF_00138
Cofactor	Binds 2 magnesium or manganese ions per subunit By similarity. HAMAP MF_00138
Pathway	Purine metabolism; IMP biosynthesis via de novo pathway; N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-alpha-D-ribose 1-diphosphate: step 2/2. HAMAP MF_00138
Sequence similarities	Belongs to the GARS family. Contains 1 ATP-grasp domain.

Ontologies

Keywords
Biological process	Purine biosynthesis
Ligand	ATP-binding Magnesium Manganese Metal-binding Nucleotide-binding
Molecular function	Ligase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	purine base biosynthetic process Inferred from electronic annotation. Source: InterPro purine nucleotide biosynthetic process Inferred from electronic annotation. Source: HAMAP
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW magnesium ion binding Inferred from electronic annotation. Source: UniProtKB-KW manganese ion binding Inferred from electronic annotation. Source: UniProtKB-KW phosphoribosylamine-glycine ligase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 449	449	Phosphoribosylamine--glycine ligase HAMAP MF_00138		PRO_0000151511
Regions
	Domain	112 – 325	214	ATP-grasp
	Nucleotide binding	139 – 202	64	ATP By similarity
Sites
	Metal binding	283	1	Magnesium or manganese 1 By similarity
	Metal binding	295	1	Magnesium or manganese 1 By similarity
	Metal binding	295	1	Magnesium or manganese 2 By similarity
	Metal binding	297	1	Magnesium or manganese 2 By similarity

Sequences

	Sequence		Length	Mass (Da)
	Q8TWG3-1 [UniParc]. Last modified June 1, 2002. Version 1. Checksum: FFD9F9189C9ADC48	FASTA	449	49,275
	10 20 30 40 50 60 MLKVLLVGSG AREHAIAEAL CGAPDEDVEL YAFMGNRNPG IIRLAEDYVV GDPTDVEAVA 70 80 90 100 110 120 RAAADWNVDF AVVGPEDPLA EGVADRLEEE GIPTFGPKRG PARIEWDKGF ARELMEKYDI 130 140 150 160 170 180 PGRPEFGIFE DPDEACDFID ELGKPVAVKP AGLTGGKGVK VVGDQLKNLD EAKEYVKEIF 190 200 210 220 230 240 EEDIGGIPKV IIEEKCVGEE YTIQAYTDGE KVIPTPAVQD HPHAYEGDKG PITGGMGSYS 250 260 270 280 290 300 CPDGLLPFIT KEDYERSVEI LERTVEAIKK ETGEPYRGVL YGQFMLTAEG PVVIEFNCRY 310 320 330 340 350 360 GDPEAMNILP IAEGDIVTLH ASIAEGSMEG EIEFLEKATV CKYVVPEGYP ESSEGEGDVI 370 380 390 400 410 420 EVDEECIHRY DAVPYYASVN LDEDGKIRMT SSRALAIVGI GDELEQAEEA AESAIRECVS 430 440 GERIRHRSDI GKHETVEKRV RRMKRIRGE

References

[1]

"The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens." Slesarev A.I., Mezhevaya K.V., Makarova K.S., Polushin N.N., Shcherbinina O.V., Shakhova V.V., Belova G.I., Aravind L., Natale D.A., Rogozin I.B., Tatusov R.L., Wolf Y.I., Stetter K.O., Malykh A.G., Koonin E.V., Kozyavkin S.A. Proc. Natl. Acad. Sci. U.S.A. 99:4644-4649(2002) [PubMed: 11930014] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: AV19 / DSM 6324 / JCM 9639 / NBRC 100938.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE009439 Genomic DNA. Translation: AAM02284.1.
RefSeq	NP_614354.1.
3D structure databases
SMR	Q8TWG3. Positions 2-432.
ModBase	Search...
Genome annotation databases
GeneID	1477172.
GenomeReviews	Gene locus MK1071 in contig AE009439_GR.
KEGG	mka:MK1071.
NMPDR	fig|190192.1.peg.1067.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG404060.
OMA	FSLMAFV.
Enzyme and pathway databases
BioCyc	MKAN190192:MK1071-MONOMER.
BRENDA	6.3.4.13. 7577.
Family and domain databases
HAMAP	MF_00138. GARS. [Tree]
InterPro	IPR011761. ATP-grasp. IPR013815. ATP_grasp_subdomain_1. IPR013816. ATP_grasp_subdomain_2. IPR013817. Pre-ATP_grasp. IPR016185. PreATP-grasp-like. IPR020561. PRibGlycinamid_synth_ATP-grasp. IPR000115. PRibGlycinamide_synth. IPR020560. PRibGlycinamide_synth_C-dom. IPR020562. PRibGlycinamide_synth_N-dom. IPR011054. Rudment_hybrid_motif. [Graphical view]
Gene3D	G3DSA:3.30.1490.20. ATP_grasp_subdomain_1. 1 hit. G3DSA:3.30.470.20. ATP_grasp_subdomain_2. 1 hit. G3DSA:3.90.600.10. Gars. 1 hit. G3DSA:3.40.50.20. Pre-ATP_grasp. 1 hit.
Pfam	PF01071. GARS_A. 1 hit. PF02843. GARS_C. 1 hit. PF02844. GARS_N. 1 hit. [Graphical view]
TIGRFAMs	TIGR00877. purD. 1 hit.
PROSITE	PS50975. ATP_GRASP. 1 hit. PS00184. GARS. False negative. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

PUR2_METKA

Accession

Primary (citable) accession number: Q8TWG3

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 25, 2002
Last sequence update:	June 1, 2002
Last modified:	February 9, 2010
This is version 51 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)