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Protein

30S ribosomal protein S4e

Gene

rps4e

Organism
Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S4eUniRule annotation
Gene namesi
Name:rps4eUniRule annotation
Ordered Locus Names:MK1220
OrganismiMethanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
Taxonomic identifieri190192 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanopyriMethanopyralesMethanopyraceaeMethanopyrus
Proteomesi
  • UP000001826 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001308501 – 26030S ribosomal protein S4eAdd BLAST260

Proteomic databases

PRIDEiQ8TW18.

Interactioni

Protein-protein interaction databases

STRINGi190192.MK1220.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini46 – 111S4 RNA-bindingUniRule annotationAdd BLAST66

Sequence similaritiesi

Belongs to the ribosomal protein S4e family.UniRule annotation
Contains 1 S4 RNA-binding domain.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04093. Archaea.
COG1471. LUCA.
HOGENOMiHOG000231324.
KOiK02987.
OMAiHIQLNLH.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
HAMAPiMF_00485. Ribosomal_S4e. 1 hit.
InterProiIPR000876. Ribosomal_S4e.
IPR013845. Ribosomal_S4e_central_region.
IPR013843. Ribosomal_S4e_N.
IPR018199. Ribosomal_S4e_N_CS.
IPR002942. S4_RNA-bd.
[Graphical view]
PANTHERiPTHR11581. PTHR11581. 1 hit.
PfamiPF00900. Ribosomal_S4e. 1 hit.
PF08071. RS4NT. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
PIRSFiPIRSF002116. Ribosomal_S4. 1 hit.
ProDomiPD002667. Ribosomal_S4e_central. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
PROSITEiPS00528. RIBOSOMAL_S4E. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8TW18-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRARSGPKR HVKRLAAPYA WPIPRKEGGK FAPRPYPGPH TMDTSVPLLI
60 70 80 90 100
LVRDMLGYAD YAREARKIIT RGEIYVDGVV RKEPKFPVGI MDVVEIPRTG
110 120 130 140 150
DRYRVVMNEH HRLDVVPISE EEARVKVCRI KNKTYVRGGN LQITMHDGKN
160 170 180 190 200
WLVEIEDPTD PKEDVYSVGD SLVLELPEPD SGESWKVVDH IPFEEGVWVY
210 220 230 240 250
AMTGRHSGEV GRVVEIQTFE GPQEDLITVE NPEGDQFQTT KGRLIAIGKD
260
EPLVTVRKEE
Length:260
Mass (Da):29,474
Last modified:June 1, 2002 - v1
Checksum:iDB126C89C7ADD0BC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009439 Genomic DNA. Translation: AAM02433.1.

Genome annotation databases

EnsemblBacteriaiAAM02433; AAM02433; MK1220.
KEGGimka:MK1220.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009439 Genomic DNA. Translation: AAM02433.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi190192.MK1220.

Proteomic databases

PRIDEiQ8TW18.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAM02433; AAM02433; MK1220.
KEGGimka:MK1220.

Phylogenomic databases

eggNOGiarCOG04093. Archaea.
COG1471. LUCA.
HOGENOMiHOG000231324.
KOiK02987.
OMAiHIQLNLH.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
HAMAPiMF_00485. Ribosomal_S4e. 1 hit.
InterProiIPR000876. Ribosomal_S4e.
IPR013845. Ribosomal_S4e_central_region.
IPR013843. Ribosomal_S4e_N.
IPR018199. Ribosomal_S4e_N_CS.
IPR002942. S4_RNA-bd.
[Graphical view]
PANTHERiPTHR11581. PTHR11581. 1 hit.
PfamiPF00900. Ribosomal_S4e. 1 hit.
PF08071. RS4NT. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
PIRSFiPIRSF002116. Ribosomal_S4. 1 hit.
ProDomiPD002667. Ribosomal_S4e_central. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
PROSITEiPS00528. RIBOSOMAL_S4E. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS4E_METKA
AccessioniPrimary (citable) accession number: Q8TW18
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 30, 2002
Last sequence update: June 1, 2002
Last modified: November 30, 2016
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.