Q8TPB3 (Q8TPB3_METAC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Glycogen debranching enzyme EMBL AAM05403.1

Gene names

Name:	treX EMBL AAM05403.1
Ordered Locus Names:	MA_2000

Organism

Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)

Taxonomic identifier

188937 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Methanomicrobia › Methanosarcinales › Methanosarcinaceae › Methanosarcina

Protein attributes

Sequence length	752 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	glycogen catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	cation binding Inferred from electronic annotation. Source: InterPro glycogen debranching enzyme activity Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q8TPB3 [UniParc]. Last modified June 1, 2002. Version 1. Checksum: C2A122008CC35641	FASTA	752	85,598
	10 20 30 40 50 60 MKTRSYKIEK GYPHPPGATC DEEGVNFSIY SEHADYVELL LFDKHDDLEP VLVLSTNRVE 70 80 90 100 110 120 ELTRPGKVES LVEASKEIGT SKEIGTSKEI KTSQKIETAE TPGIALNKTF HFWHVYIRGL 130 140 150 160 170 180 KPGVHYAYRI GGPFDPSGGY RFDGGKVLID PYSRGNNKTL WDREKASVPG DNLSTSMRSV 190 200 210 220 230 240 VIDPSRYRWE NNSHITAEKV YEMPGKWEDL FGKSRLQELN ETIIYELHVG GFTRSPSSGV 250 260 270 280 290 300 KTPGTFSGII EKIPYLKELG ITAVELMPVF DFDDTISPEG KRHYWGYDPI CFFAPHSGYC 310 320 330 340 350 360 KNPERGDHTK EFRDMVKALH KAGIEVILDV VFNHTAEGDH LGPVFSFKGI DNSIYYHLEP 370 380 390 400 410 420 DRQYYSNYSG CGNTVNCNHP ISQKLIVDSL KYWTEEMHVD GFRFDQGSIL SLDTDGKVMK 430 440 450 460 470 480 YPPVIWQIEL DDSLGYIKVI AEAWDAAALN QVGYFPGPRW AEWNGYYRDE IRRFVRGDPG 490 500 510 520 530 540 LVGRVASRIA GSPDLYQSES RLPINSVNFV TCHDGFTLND LVSYNYKHNE ANGENNRDGT 550 560 570 580 590 600 DNNLSWNCGV EGETEDPEIE ALRERQIKNF ASILLLSIGV PMISMGDEVR RTQKGNNNAY 610 620 630 640 650 660 CQDNGTGWFD WNLVGRNRDM FRFWKLMIDF RKRHTTILRP RYFTGKENER GLKDISWYGC 670 680 690 700 710 720 KLNSPGWDDP YARALSFTMG EPGDEEDIHV MMNMYWEPLE FEIPGLRERN WHRAVDTFLP 730 740 750 PPQDIAGAGE EVQVNGSSCT VQGRSVVVLI SK

References

[1]

"The genome of Methanosarcina acetivorans reveals extensive metabolic and physiological diversity." Galagan J.E., Nusbaum C., Roy A., Endrizzi M.G., Macdonald P., FitzHugh W., Calvo S., Engels R., Smirnov S., Atnoor D., Brown A., Allen N., Naylor J., Stange-Thomann N., DeArellano K., Johnson R., Linton L., McEwan P. , McKernan K., Talamas J., Tirrell A., Ye W., Zimmer A., Barber R.D., Cann I., Graham D.E., Grahame D.A., Guss A.M., Hedderich R., Ingram-Smith C., Kuettner H.C., Krzycki J.A., Leigh J.A., Li W., Liu J., Mukhopadhyay B., Reeve J.N., Smith K., Springer T.A., Umayam L.A., White O., White R.H., de Macario E.C., Ferry J.G., Jarrell K.F., Jing H., Macario A.J.L., Paulsen I.T., Pritchett M., Sowers K.R., Swanson R.V., Zinder S.H., Lander E., Metcalf W.W., Birren B. Genome Res. 12:532-542(2002) [PubMed: 11932238] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 35395 / DSM 2834 / JCM 12185 / C2A.

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Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE010299 Genomic DNA. Translation: AAM05403.1.
RefSeq	NP_616923.1. NC_003552.1.
3D structure databases
HSSP	HSSP built from PDB template 1BF2 based on UniProtKB P10342.
ProteinModelPortal	Q8TPB3.
ModBase	Search...
Protein family/group databases
CAZy	CBM48. Carbohydrate-Binding Module Family 48. GH13. Glycoside Hydrolase Family 13.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	1473889.
GenomeReviews	Gene locus MA_2000 in contig AE010299_GR.
KEGG	mac:MA2000.
NMPDR	fig|188937.1.peg.1949.
Phylogenomic databases
HOGENOM	HBG350946.
OMA	SIYSEHA.
ProtClustDB	CLSK568886.
Family and domain databases
InterPro	IPR015902. Alpha_amylase. IPR013780. Glyco_hydro_13_b. IPR006047. Glyco_hydro_13_cat_dom. IPR013781. Glyco_hydro_subgr_catalytic. IPR011837. Glycogen_debranch_debranch. IPR017853. Glycoside_hydrolase_SF. IPR013783. Ig-like_fold. IPR014756. Ig_E-set. [Graphical view]
Gene3D	G3DSA:2.60.40.1180. Glyco_hydro_13_b. 1 hit. G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit. G3DSA:2.60.40.10. Ig-like_fold. 2 hits.
KO	K02438.
PANTHER	PTHR10357. Alpha_amylase. 1 hit. PTHR10357:SF74. PTHR10357:SF74. 1 hit.
Pfam	PF00128. Alpha-amylase. 1 hit. [Graphical view]
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit. SSF81296. Ig_E-set. 1 hit.
TIGRFAMs	TIGR02100. GlgX_debranch. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q8TPB3_METAC

Accession

Primary (citable) accession number: Q8TPB3

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2002
Last sequence update:	June 1, 2002
Last modified:	November 16, 2011
This is version 52 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)