Reviewed, UniProtKB/Swiss-Prot Q8TKB4 (PDAD2_METAC)

Names and origin

Protein names

Recommended name:
    Pyruvoyl-dependent arginine decarboxylase 2
      Short name=PvlArgDC 2
    EC=4.1.1.19
Cleaved into the following 2 chains:
    1- Recommended name:
            Pyruvoyl-dependent arginine decarboxylase 2 subunit beta
    2- Recommended name:
            Pyruvoyl-dependent arginine decarboxylase 2 subunit alpha

Gene names

Name:	pdaD2
Ordered Locus Names:	MA_3496

Organism

Methanosarcina acetivorans [Complete proteome] [HAMAP]

Taxonomic identifier

2214 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Methanomicrobia › Methanosarcinales › Methanosarcinaceae › Methanosarcina

Protein attributes

Sequence length	183 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Inferred from homology.

General annotation (Comments)

Catalytic activity	L-arginine = agmatine + CO2. HAMAP MF_01404
Cofactor	Pyruvoyl group By similarity. HAMAP MF_01404
Sequence similarities	Belongs to the pdaD family.

Ontologies

Keywords
Ligand	Pyruvate
Molecular function	Decarboxylase Lyase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	arginine catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	arginine decarboxylase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 40	40	Pyruvoyl-dependent arginine decarboxylase 2 subunit beta By similarity		PRO_0000023312
	Chain	41 – 183	143	Pyruvoyl-dependent arginine decarboxylase 2 subunit alpha By similarity		PRO_0000023313
Sites
	Site	40 – 41	2	Cleavage (non-hydrolytic) By similarity
Amino acid modifications
	Modified residue	41	1	Pyruvic acid (Ser) By similarity

Sequences

	Sequence		Length	Mass (Da)
	Q8TKB4-1 [UniParc]. Last modified June 1, 2002. Version 1. Checksum: F4E8FE02CC5923B1	FASTA	183	20,138
	10 20 30 40 50 60 MIPRKAFLTK GTGVHKDRLA SFELALRDAK IEKYNLVSVS SILPPNCKLV TREEGLSELK 70 80 90 100 110 120 PGAIVHCVLA RNDTNEPHRL MASAIGTAVP VNEDNYGYIS EHHSFGEEEI IAGEYAEDLA 130 140 150 160 170 180 ATMLATTLGI EFNAEMAWHE REQVYKASGH IFDTFHICQT AAGDKNGKWT TVVAAMVFVT SKC

References

[1]

"The genome of Methanosarcina acetivorans reveals extensive metabolic and physiological diversity." Galagan J.E., Nusbaum C., Roy A., Endrizzi M.G., Macdonald P., FitzHugh W., Calvo S., Engels R., Smirnov S., Atnoor D., Brown A., Allen N., Naylor J., Stange-Thomann N., DeArellano K., Johnson R., Linton L., McEwan P. , McKernan K., Talamas J., Tirrell A., Ye W., Zimmer A., Barber R.D., Cann I., Graham D.E., Grahame D.A., Guss A.M., Hedderich R., Ingram-Smith C., Kuettner H.C., Krzycki J.A., Leigh J.A., Li W., Liu J., Mukhopadhyay B., Reeve J.N., Smith K., Springer T.A., Umayam L.A., White O., White R.H., de Macario E.C., Ferry J.G., Jarrell K.F., Jing H., Macario A.J.L., Paulsen I.T., Pritchett M., Sowers K.R., Swanson R.V., Zinder S.H., Lander E., Metcalf W.W., Birren B. Genome Res. 12:532-542(2002) [PubMed: 11932238] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 35395 / DSM 2834 / JCM 12185 / C2A.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE010299 Genomic DNA. Translation: AAM06861.1.
RefSeq	NP_618381.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	1475390.
GenomeReviews	Gene locus MA_3496 in contig AE010299_GR.
KEGG	mac:MA3496.
NMPDR	fig|188937.1.peg.3407.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG539680.
OMA	YKMSGKI.
Enzyme and pathway databases
BioCyc	MACE188937:MA3496-MONOMER.
BRENDA	4.1.1.19. 275708.
Family and domain databases
HAMAP	MF_01404. PvlArgDC. [Tree]
InterPro	IPR016104. Pyr-dep_his/arg-deCO2ase. IPR016105. Pyr-dep_his/arg-deCO2ase_sand. IPR002724. Pyruvoyl-dep_arg_deCO2ase. [Graphical view]
Gene3D	G3DSA:3.50.20.10. Pyr-dep_his/arg-deCO2ase_sand. 1 hit.
Pfam	PF01862. PvlArgDC. 1 hit. [Graphical view]
PIRSF	PIRSF005216. Pyruvoyl-dep_arg_deCO2ase. 1 hit.
ProDom	PD010449. Pyruvoyl-dep_arg_deCO2ase. 1 hit. [Graphical view] [Entries sharing at least one domain]
TIGRFAMs	TIGR00286. PvlArgDC. 1 hit.
ProtoNet	Search...

Entry information

Entry name

PDAD2_METAC

Accession

Primary (citable) accession number: Q8TKB4

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 11, 2002
Last sequence update:	June 1, 2002
Last modified:	February 9, 2010
This is version 53 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)