Q8TF17 (S3TC2_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 108.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: SH3 domain and tetratricopeptide repeat-containing protein 2 | ||||||
| Gene names |
| ||||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||||
| Taxonomic identifier | 9606 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1288 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Tissue specificity | Strongly expressed in brain and spinal cord. Expressed at equal level in spinal cord and sciatic nerve. Weakly expressed in striated muscle. Ref.1 |
| Involvement in disease | Charcot-Marie-Tooth disease 4C (CMT4C) [MIM:601596]: A recessive demyelinating form of Charcot-Marie-Tooth disease, a disorder of the peripheral nervous system, characterized by progressive weakness and atrophy, initially of the peroneal muscles and later of the distal muscles of the arms. Charcot-Marie-Tooth disease is classified in two main groups on the basis of electrophysiologic properties and histopathology: primary peripheral demyelinating neuropathies (designated CMT1 when they are dominantly inherited) and primary peripheral axonal neuropathies (CMT2). Demyelinating neuropathies are characterized by severely reduced nerve conduction velocities (less than 38 m/sec), segmental demyelination and remyelination with onion bulb formations on nerve biopsy, slowly progressive distal muscle atrophy and weakness, absent deep tendon reflexes, and hollow feet. By convention autosomal recessive forms of demyelinating Charcot-Marie-Tooth disease are designated CMT4. CMT4C is characterized by onset in childhood, early-onset scoliosis and a distinct Schwann cell pathology. Mononeuropathy of the median nerve mild (MNMN) [MIM:613353]: A disease characterized by median nerve mononeuropathy at the wrist. The clinical presentation ranges from a mild phenotype, consistent with carpal tunnel syndrome, to a severe median nerve mononeuropathy at the wrist associated with evidence of a more widespread axonal polyneuropathy. The latter phenotype is similar to that of patients with hereditary neuropathy with liability to pressure palsies. |
| Sequence similarities | Contains 1 SH3 domain. Contains 8 TPR repeats. |
Ontologies
| Keywords | |
|---|---|
| Coding sequence diversity | Alternative splicing Polymorphism |
| Disease | Charcot-Marie-Tooth disease Disease mutation Neuropathy |
| Domain | Repeat SH3 domain TPR repeat |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | peripheral nervous system myelin maintenance Inferred from electronic annotation. Source: Compara |
| Cellular_component | plasma membrane Inferred from electronic annotation. Source: Compara recycling endosomeInferred from electronic annotation. Source: Compara |
| Complete GO annotation... | |
Alternative products
| This entry describes 4 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q8TF17-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q8TF17-2) The sequence of this isoform differs from the canonical sequence as follows: 1-1138: Missing. 1139-1159: LEGYEKALEFATLAARLSTVT → MSEQMMQSVGCRISLSVFQFL | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 3 (identifier: Q8TF17-3) The sequence of this isoform differs from the canonical sequence as follows: 1-1138: Missing. 1139-1159: LEGYEKALEFATLAARLSTVT → MSEQMMQSVGCRISLSVFQFL 1226-1288: DAHDATEYFL...RWLSGGGLAL → VRARLPRFPD...GGAEKTRVPR | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 4 (identifier: Q8TF17-4) The sequence of this isoform differs from the canonical sequence as follows: 1-453: Missing. 959-1049: QLQATKSLCH...TDKAAEAWLG → KYVPCCWEAI...WSPWGSFIGT 1050-1288: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1288 | 1288 | SH3 domain and tetratricopeptide repeat-containing protein 2 | PRO_0000106356 | |||||
Regions | |||||||||
| Domain | 268 – 331 | 64 | SH3 | ||||||
| Repeat | 528 – 561 | 34 | TPR 1 | ||||||
| Repeat | 757 – 790 | 34 | TPR 2 | ||||||
| Repeat | 836 – 869 | 34 | TPR 3 | ||||||
| Repeat | 1001 – 1037 | 37 | TPR 4 | ||||||
| Repeat | 1084 – 1118 | 35 | TPR 5 | ||||||
| Repeat | 1119 – 1152 | 34 | TPR 6 | ||||||
| Repeat | 1166 – 1199 | 34 | TPR 7 | ||||||
| Repeat | 1210 – 1244 | 35 | TPR 8 | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 1138 | 1138 | Missing in isoform 2 and isoform 3. | VSP_009884 | |||||
| Alternative sequence | 1 – 453 | 453 | Missing in isoform 4. | VSP_009881 | |||||
| Alternative sequence | 959 – 1049 | 91 | QLQAT…EAWLG → KYVPCCWEAIERSVGSSFIH FLSQVISFMSLLCVQVSFRP PNPSAISTALCPQTLRHASP TMSTGWPWLSNSGTGRWKEG CWSPWGSFIGT in isoform 4. | VSP_009882 | |||||
| Alternative sequence | 1050 – 1288 | 239 | Missing in isoform 4. | VSP_009883 | |||||
| Alternative sequence | 1139 – 1159 | 21 | LEGYE…LSTVT → MSEQMMQSVGCRISLSVFQF L in isoform 2 and isoform 3. | VSP_009885 | |||||
| Alternative sequence | 1226 – 1288 | 63 | DAHDA…GGLAL → VRARLPRFPDSHHPTILLPD SKTMRSLCGGAEKTRVPR in isoform 3. | VSP_009886 | |||||
| Natural variant | 169 | 1 | Y → H in MNMN. Ref.7 | VAR_064421 | |||||
| Natural variant | 171 | 1 | G → E. Corresponds to variant rs17722293 [ dbSNP | Ensembl ]. | VAR_052622 | |||||
| Natural variant | 468 | 1 | A → S. Ref.5 Ref.6 Corresponds to variant rs6875902 [ dbSNP | Ensembl ]. | VAR_018267 | |||||
| Natural variant | 529 | 1 | R → Q in CMT4C; homozygous in 2 unrelated Turkish patients; also found in 1 of 320 Turkish control chromosomes. Ref.1 | VAR_018268 | |||||
| Natural variant | 657 | 1 | E → K in CMT4C; homozygous in a Turkish patient. Ref.1 | VAR_018269 | |||||
| Natural variant | 658 | 1 | R → C in CMT4C; heterozygous in one German patient with affected sibling. Ref.1 | VAR_018270 | |||||
| Natural variant | 696 | 1 | H → R. Corresponds to variant rs17109261 [ dbSNP | Ensembl ]. | VAR_052623 | |||||
Experimental info | |||||||||
| Sequence conflict | 334 | 1 | M → R in BAB85571. Ref.6 | ||||||
| Sequence conflict | 1158 | 1 | V → I in BAB85571. Ref.6 | ||||||
Sequences
| ||||||||||||||||||||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "Mutations in a gene encoding a novel SH3/TPR domain protein cause autosomal recessive Charcot-Marie-Tooth type 4C neuropathy." Senderek J., Bergmann C., Stendel C., Kirfel J., Verpoorten N., De Jonghe P., Timmerman V., Chrast R., Verheijen M.H.G., Lemke G., Battaloglu E., Parman Y., Erdem S., Tan E., Topaloglu H., Hahn A., Mueller-Felber W., Rizzuto N. Zerres K.Am. J. Hum. Genet. 73:1106-1119(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), TISSUE SPECIFICITY, VARIANTS CMT4C GLN-529; LYS-657 AND CYS-658. Tissue: Sciatic nerve. |
| [2] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2 AND 4). Tissue: Hippocampus. |
| [3] | "Large-scale cDNA transfection screening for genes related to cancer development and progression." Wan D., Gong Y., Qin W., Zhang P., Li J., Wei L., Zhou X., Li H., Qiu X., Zhong F., He L., Yu J., Yao G., Jiang H., Qian L., Yu Y., Shu H., Chen X. Gu J.Proc. Natl. Acad. Sci. U.S.A. 101:15724-15729(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3). |
| [4] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANT SER-468. |
| [6] | "Prediction of the coding sequences of unidentified human genes. XXII. The complete sequences of 50 new cDNA clones which code for large proteins." Nagase T., Kikuno R., Ohara O. DNA Res. 8:319-327(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 334-1288 (ISOFORM 1), VARIANT SER-468. Tissue: Brain. |
| [7] | "Whole-genome sequencing in a patient with Charcot-Marie-Tooth neuropathy." Lupski J.R., Reid J.G., Gonzaga-Jauregui C., Rio Deiros D., Chen D.C., Nazareth L., Bainbridge M., Dinh H., Jing C., Wheeler D.A., McGuire A.L., Zhang F., Stankiewicz P., Halperin J.J., Yang C., Gehman C., Guo D., Irikat R.K. Gibbs R.A.N. Engl. J. Med. 362:1181-1191(2010) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT MNMN HIS-169. |
| + | Additional computationally mapped references. |
Web resources
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AY341075 mRNA. Translation: AAR03497.1. AK124854 mRNA. Translation: BAG54107.1. AK127248 mRNA. Translation: BAC86899.1. AK023667 mRNA. Translation: BAB14631.1. AF370410 mRNA. Translation: AAQ15246.1. CH471062 Genomic DNA. Translation: EAW61796.1. BC113879 mRNA. Translation: AAI13880.1. AB075865 mRNA. Translation: BAB85571.1. |
| IPI | IPI00291798. IPI00394968. IPI00410020. IPI00922877. |
| RefSeq | NP_078853.2. NM_024577.3. |
| UniGene | Hs.483784. |
3D structure databases | |
| ProteinModelPortal | Q8TF17. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | 9606.ENSP00000313025. |
PTM databases | |
| PhosphoSite | Q8TF17. |
Polymorphism databases | |
| DMDM | 46396469. |
Proteomic databases | |
| PaxDb | Q8TF17. |
| PRIDE | Q8TF17. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000502274; ENSP00000421092; ENSG00000169247. ENST00000515425; ENSP00000423660; ENSG00000169247. |
| GeneID | 79628. |
| KEGG | hsa:79628. |
| UCSC | uc003lpt.3. human. |
Organism-specific databases | |
| CTD | 79628. |
| GeneCards | GC05M148303. |
| HGNC | HGNC:29427. SH3TC2. |
| HPA | HPA037684. |
| MIM | 601596. phenotype. 608206. gene. 613353. phenotype. |
| neXtProt | NX_Q8TF17. |
| Orphanet | 99949. Charcot-Marie-Tooth disease type 4C. |
| PharmGKB | PA134951912. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | COG0457. |
| HOVERGEN | HBG054553. |
| InParanoid | Q8TF17. |
| OMA | FYSSVSP. |
| PhylomeDB | Q8TF17. |
Gene expression databases | |
| ArrayExpress | Q8TF17. |
| Bgee | Q8TF17. |
| CleanEx | HS_SH3TC2. |
| Genevestigator | Q8TF17. |
| GermOnline | ENSG00000169247. Homo sapiens. |
Family and domain databases | |
| Gene3D | 1.25.40.10. 3 hits. |
| InterPro | IPR001452. SH3_domain. IPR001440. TPR-1. IPR011990. TPR-like_helical. IPR019734. TPR_repeat. [Graphical view] |
| Pfam | PF00018. SH3_1. 1 hit. PF00515. TPR_1. 1 hit. [Graphical view] |
| SMART | SM00326. SH3. 1 hit. SM00028. TPR. 3 hits. [Graphical view] |
| SUPFAM | SSF50044. SH3. 1 hit. |
| PROSITE | PS50002. SH3. 1 hit. PS50005. TPR. False negative. PS50293. TPR_REGION. False negative. [Graphical view] |
| ProtoNet | Search... |
Other | |
| GenomeRNAi | 79628. |
| NextBio | 68717. |
| SOURCE | Search... |
Entry information
| Entry name | S3TC2_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q8TF17 Secondary accession number(s): B3KWE5, Q14CF5, Q9H8I5 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 5 Human chromosome 5: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
