Reviewed,
UniProtKB/Swiss-Prot Q8TEM1 (PO210_HUMAN)
Last modified
February 9, 2010.
Version 59.
History...
Clusters with 100%,
90%,
50% identity |
Documents (5) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Nuclear pore membrane glycoprotein 210 Short name=Nuclear pore protein gp210 Alternative name(s): Nuclear envelope pore membrane protein POM 210 Short name=POM210 Pore membrane protein of 210 kDa Nucleoporin Nup210 | ||||||
| Gene names |
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| Organism | Homo sapiens (Human) [Complete proteome] | ||||||
| Taxonomic identifier | 9606 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 1887 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Nucleoporin essential for nuclear pore assembly and fusion, nuclear pore spacing, as well as structural integrity. Ref.8 |
| Subunit structure | Forms dimers and possibly higher-order oligomers By similarity. |
| Subcellular location | Nucleus › nuclear pore complex. Nucleus membrane; Single-pass type I membrane protein. Endoplasmic reticulum membrane; Single-pass type I membrane protein Ref.7. |
| Tissue specificity | Ubiquitous expression, with highest levels in lung, liver, pancreas, testis, and ovary, intermediate levels in brain, kidney, and spleen, and lowest levels in heart and skeletal muscle. Ref.4 |
| Post-translational modification | N-glycosylated, but not all potential glycosylation sites may be used. Contains high-mannose type oligosaccharides By similarity. Ref.12 Phosphorylated at Ser-1881 in mitosis specifically; not phosphorylated in interphase By similarity. Ref.9 Ref.10 Ref.14 |
| Miscellaneous | Recognized by antinuclear autoantibodies in primary biliary cirrhosis. Knockdown of NUP210 causes nuclear membranes to accumulate aberrant structures termed twinned and fusion-arrested membranes and nuclear pore complex to cluster. Induces cell death and chromatin disruptions. |
| Sequence similarities | Belongs to the NUP210 family. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Protein transport Translocation Transport mRNA transport |
| Cellular component | Endoplasmic reticulum Membrane Nuclear pore complex Nucleus |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Signal Transmembrane |
| PTM | Glycoprotein Phosphoprotein |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | mRNA transport Inferred from electronic annotation. Source: UniProtKB-KW protein transportInferred from electronic annotation. Source: UniProtKB-KW transmembrane transportInferred from electronic annotation. Source: UniProtKB-KW |
| Cellular component | endoplasmic reticulum Inferred from electronic annotation. Source: UniProtKB-KW nuclear poreInferred from electronic annotation. Source: UniProtKB-SubCell |
| Complete GO annotation... | |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q8TEM1-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q8TEM1-2) The sequence of this isoform differs from the canonical sequence as follows: 947-967: HPLLPGSSTIMIHDLCLVFPA → SLGHRSPLLVFIPYLGCCVVN 968-1887: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 26 | 26 | By similarity | ||||||
| Chain | 27 – 1887 | 1861 | Nuclear pore membrane glycoprotein 210 | PRO_0000236046 | |||||
Regions | |||||||||
| Topological domain | 27 – 1808 | 1782 | Lumenal Probable | ||||||
| Transmembrane | 1809 – 1829 | 21 | Potential | ||||||
| Topological domain | 1830 – 1887 | 58 | Cytoplasmic Probable | ||||||
| Compositional bias | 486 – 491 | 6 | Poly-Ser | ||||||
Amino acid modifications | |||||||||
| Modified residue | 1844 | 1 | Phosphothreonine Ref.9 Ref.10 | ||||||
| Modified residue | 1874 | 1 | Phosphoserine Ref.10 Ref.14 | ||||||
| Modified residue | 1877 | 1 | Phosphoserine Ref.14 | ||||||
| Modified residue | 1881 | 1 | Phosphoserine Ref.10 Ref.14 | ||||||
| Modified residue | 1886 | 1 | Phosphoserine Ref.10 | ||||||
| Glycosylation | 44 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 337 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 405 | 1 | N-linked (GlcNAc...) Ref.12 | ||||||
| Glycosylation | 484 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 681 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 801 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 926 | 1 | N-linked (GlcNAc...) Ref.12 | ||||||
| Glycosylation | 1039 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 1116 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 1135 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 1362 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 1441 | 1 | N-linked (GlcNAc...) Ref.12 | ||||||
Natural variations | |||||||||
| Alternative sequence | 947 – 967 | 21 | HPLLP…LVFPA → SLGHRSPLLVFIPYLGCCVV N in isoform 2. | VSP_018567 | |||||
| Alternative sequence | 968 – 1887 | 920 | Missing in isoform 2. | VSP_018568 | |||||
| Natural variant | 297 | 1 | A → T: dbSNP rs7628051. | VAR_028147 | |||||
| Natural variant | 608 | 1 | I → V: dbSNP rs3732671. | VAR_028148 | |||||
| Natural variant | 755 | 1 | A → V: dbSNP rs6795271. | VAR_028149 | |||||
| Natural variant | 786 | 1 | R → L: dbSNP rs2280084. Ref.3 | VAR_026474 | |||||
| Natural variant | 821 | 1 | P → A: dbSNP rs2280085. | VAR_028150 | |||||
| Natural variant | 944 | 1 | A → P: dbSNP rs433032. | VAR_028151 | |||||
| Natural variant | 1096 | 1 | M → I: dbSNP rs2271505. | VAR_028152 | |||||
| Natural variant | 1430 | 1 | D → E: dbSNP rs13081937. | VAR_028153 | |||||
| Natural variant | 1752 | 1 | L → S: dbSNP rs354479. Ref.4 Ref.5 Ref.6 | VAR_026475 | |||||
| Natural variant | 1787 | 1 | V → M: dbSNP rs354478. Ref.4 Ref.5 Ref.6 | VAR_026476 | |||||
Experimental info | |||||||||
| Sequence conflict | 1512 | 1 | A → T in BAC11688. Ref.5 | ||||||
| Sequence conflict | 1761 | 1 | P → S in BAC11688. Ref.5 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "The DNA sequence, annotation and analysis of human chromosome 3." Muzny D.M., Scherer S.E., Kaul R., Wang J., Yu J., Sudbrak R., Buhay C.J., Chen R., Cree A., Ding Y., Dugan-Rocha S., Gill R., Gunaratne P., Harris R.A., Hawes A.C., Hernandez J., Hodgson A.V., Hume J. Gibbs R.A.Nature 440:1194-1198(2006) [PubMed: 16641997] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [2] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Spleen. |
| [3] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 763-1887 (ISOFORM 1), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 412-1887 (ISOFORM 2), VARIANT LEU-786. Tissue: Brain and Spleen. |
| [4] | "Prediction of the coding sequences of unidentified human genes. XII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro." Nagase T., Ishikawa K., Suyama M., Kikuno R., Hirosawa M., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O. DNA Res. 5:355-364(1998) [PubMed: 10048485] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 965-1887 (ISOFORM 1), VARIANTS SER-1752 AND MET-1787, TISSUE SPECIFICITY. Tissue: Brain. |
| [5] | "Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries." Otsuki T., Ota T., Nishikawa T., Hayashi K., Suzuki Y., Yamamoto J., Wakamatsu A., Kimura K., Sakamoto K., Hatano N., Kawai Y., Ishii S., Saito K., Kojima S., Sugiyama T., Ono T., Okano K., Yoshikawa Y. Isogai T.DNA Res. 12:117-126(2005) [PubMed: 16303743] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1405-1887 (ISOFORM 1), VARIANTS SER-1752 AND MET-1787. Tissue: Ovary tumor. |
| [6] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed: 17974005] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1460-1887 (ISOFORM 1), VARIANTS SER-1752 AND MET-1787. Tissue: Testis. |
| [7] | "The 210-kD nuclear envelope polypeptide recognized by human autoantibodies in primary biliary cirrhosis is the major glycoprotein of the nuclear pore." Courvalin J.-C., Lassoued K., Bartnik E., Blobel G., Wozniak R.W. J. Clin. Invest. 86:279-285(1990) [PubMed: 2195063] [Abstract] Cited for: SUBCELLULAR LOCATION. Tissue: Cervix carcinoma. |
| [8] | "Nuclear pore protein gp210 is essential for viability in HeLa cells and Caenorhabditis elegans." Cohen M., Feinstein N., Wilson K.L., Gruenbaum Y. Mol. Biol. Cell 14:4230-4237(2003) [PubMed: 14517331] [Abstract] Cited for: FUNCTION. Tissue: Cervix carcinoma. |
| [9] | "Phosphoproteome analysis of the human mitotic spindle." Nousiainen M., Sillje H.H.W., Sauer G., Nigg E.A., Koerner R. Proc. Natl. Acad. Sci. U.S.A. 103:5391-5396(2006) [PubMed: 16565220] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-1844, MASS SPECTROMETRY. Tissue: Epithelium. |
| [10] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-1844; SER-1874; SER-1881 AND SER-1886, MASS SPECTROMETRY. |
| [11] | Colinge J., Superti-Furga G., Bennett K.L. Submitted (OCT-2008) to UniProtKB Cited for: IDENTIFICATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. |
| [12] | "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry." Chen R., Jiang X., Sun D., Han G., Wang F., Ye M., Wang L., Zou H. J. Proteome Res. 8:651-661(2009) [PubMed: 19159218] [Abstract] Cited for: GLYCOSYLATION [LARGE SCALE ANALYSIS] AT ASN-405; ASN-926 AND ASN-1441, MASS SPECTROMETRY. Tissue: Liver. |
| [13] | "Large-scale proteomics analysis of the human kinome." Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G., Mann M., Daub H. Mol. Cell. Proteomics 8:1751-1764(2009) [PubMed: 19369195] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-1844, MASS SPECTROMETRY. |
| [14] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed: 19690332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1874; SER-1877 AND SER-1881, MASS SPECTROMETRY. Tissue: T-cell. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AC027124 Genomic DNA. No translation available. AC069246 Genomic DNA. No translation available. BC067089 mRNA. Translation: AAH67089.1. AK026042 mRNA. Translation: BAB15332.1. Different initiation. AK074101 mRNA. Translation: BAB84927.1. AB020713 mRNA. Translation: BAA74929.1. AK075545 mRNA. Translation: BAC11688.1. Different initiation. AL117527 mRNA. Translation: CAB55979.2. |
| IPI | IPI00291755. IPI00871723. |
| PIR | T17289. |
| RefSeq | NP_079199.2. |
| UniGene | Hs.475525 |
3D structure databases | |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q8TEM1. 1 interaction. |
| STRING | Q8TEM1. |
PTM databases | |
| PhosphoSite | Q8TEM1. |
Proteomic databases | |
| PRIDE | Q8TEM1. |
Genome annotation databases | |
| Ensembl | ENST00000254508; ENSP00000254508; ENSG00000132182; Homo sapiens. [Genome view] |
| GeneID | 23225. |
| KEGG | hsa:23225. |
| UCSC | uc003bxv.1. human. |
Organism-specific databases | |
| CTD | 23225. |
| GeneCards | GC03M013332. |
| H-InvDB | HIX0003074. |
| HGNC | HGNC:30052. NUP210. |
| MIM | 607703. gene. |
| PharmGKB | PA128394614. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | prNOG10757. |
| HOVERGEN | Q8TEM1. |
| InParanoid | Q8TEM1. |
| OMA | DSHNALR. |
| OrthoDB | EOG9962B6. |
Enzyme and pathway databases | |
| Reactome | REACT_6185. HIV Infection. |
Gene expression databases | |
| ArrayExpress | Q8TEM1. |
| Bgee | Q8TEM1. |
| CleanEx | HS_NUP210. |
| Genevestigator | Q8TEM1. |
| GermOnline | ENSG00000132182. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR003343. Big_2. IPR008964. Invasin/intimin_cell_adhesion. [Graphical view] |
| Pfam | PF02368. Big_2. 1 hit. [Graphical view] |
| SMART | SM00635. BID_2. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other Resources | |
| NextBio | 44833. |
| SOURCE | Search... |
Entry information
| Entry name | PO210_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q8TEM1 Secondary accession number(s): A6NN56 Q9UFP3 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 3 Human chromosome 3: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with


