Q8TDW7 (FAT3_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 92.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Protocadherin Fat 3 Short name=hFat3 Alternative name(s): Cadherin family member 15 FAT tumor suppressor homolog 3 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 4589 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at transcript level |
General annotation (Comments)
| Function | May play a role in the interactions between neurites derived from specific subsets of neurons during development By similarity. |
| Subcellular location | Membrane; Single-pass type I membrane protein Potential. |
| Tissue specificity | Expressed in ES cells, primitive neuroectoderm, fetal brain, infant brain, adult neural tissues and prostate. Ref.4 |
| Sequence similarities | Contains 33 cadherin domains. Contains 4 EGF-like domains. Contains 1 laminin G-like domain. |
| Sequence caution | The sequence AAH16722.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Cell adhesion |
| Cellular component | Membrane |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | EGF-like domain Repeat Signal Transmembrane Transmembrane helix |
| Ligand | Calcium |
| Molecular function | Developmental protein |
| PTM | Disulfide bond Glycoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | homophilic cell adhesion Inferred from electronic annotation. Source: InterPro multicellular organismal developmentInferred from electronic annotation. Source: UniProtKB-KW |
| Cellular_component | integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW plasma membraneInferred from electronic annotation. Source: InterPro |
| Molecular_function | calcium ion binding Inferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q8TDW7-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q8TDW7-2) The sequence of this isoform differs from the canonical sequence as follows: 1204-1260: LITTTSRKLD...KPQFPEKVYQ → SCSVAQAGMQ...PPCPATFLNS 1261-4589: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 3 (identifier: Q8TDW7-3) The sequence of this isoform differs from the canonical sequence as follows: 4351-4382: Missing. | ||||||
| Note: Gene prediction based on similarity to rat ortholog and partial EST and cDNA data. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||
Molecule processing | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 32 | 32 | Potential | ||||||||
| Chain | 33 – 4589 | 4557 | Protocadherin Fat 3 | PRO_0000324634 | |||||||
Regions | |||||||||||
| Topological domain | 33 – 4154 | 4122 | Extracellular Potential | ||||||||
| Transmembrane | 4155 – 4175 | 21 | Helical; Potential | ||||||||
| Topological domain | 4176 – 4589 | 414 | Cytoplasmic Potential | ||||||||
| Domain | 44 – 158 | 115 | Cadherin 1 | ||||||||
| Domain | 159 – 266 | 108 | Cadherin 2 | ||||||||
| Domain | 264 – 375 | 112 | Cadherin 3 | ||||||||
| Domain | 377 – 472 | 96 | Cadherin 4 | ||||||||
| Domain | 473 – 578 | 106 | Cadherin 5 | ||||||||
| Domain | 579 – 681 | 103 | Cadherin 6 | ||||||||
| Domain | 727 – 831 | 105 | Cadherin 7 | ||||||||
| Domain | 832 – 936 | 105 | Cadherin 8 | ||||||||
| Domain | 937 – 1043 | 107 | Cadherin 9 | ||||||||
| Domain | 1044 – 1148 | 105 | Cadherin 10 | ||||||||
| Domain | 1149 – 1254 | 106 | Cadherin 11 | ||||||||
| Domain | 1255 – 1359 | 105 | Cadherin 12 | ||||||||
| Domain | 1363 – 1460 | 98 | Cadherin 13 | ||||||||
| Domain | 1461 – 1566 | 106 | Cadherin 14 | ||||||||
| Domain | 1567 – 1769 | 203 | Cadherin 15 | ||||||||
| Domain | 1770 – 1883 | 114 | Cadherin 16 | ||||||||
| Domain | 1884 – 1986 | 103 | Cadherin 17 | ||||||||
| Domain | 1983 – 2084 | 102 | Cadherin 18 | ||||||||
| Domain | 2085 – 2186 | 102 | Cadherin 19 | ||||||||
| Domain | 2187 – 2287 | 101 | Cadherin 20 | ||||||||
| Domain | 2288 – 2394 | 107 | Cadherin 21 | ||||||||
| Domain | 2395 – 2496 | 102 | Cadherin 22 | ||||||||
| Domain | 2497 – 2600 | 104 | Cadherin 23 | ||||||||
| Domain | 2601 – 2708 | 108 | Cadherin 24 | ||||||||
| Domain | 2709 – 2814 | 106 | Cadherin 25 | ||||||||
| Domain | 2815 – 2924 | 110 | Cadherin 26 | ||||||||
| Domain | 2925 – 3029 | 105 | Cadherin 27 | ||||||||
| Domain | 3030 – 3131 | 102 | Cadherin 28 | ||||||||
| Domain | 3132 – 3236 | 105 | Cadherin 29 | ||||||||
| Domain | 3237 – 3341 | 105 | Cadherin 30 | ||||||||
| Domain | 3342 – 3446 | 105 | Cadherin 31 | ||||||||
| Domain | 3447 – 3551 | 105 | Cadherin 32 | ||||||||
| Domain | 3552 – 3653 | 102 | Cadherin 33 | ||||||||
| Domain | 3795 – 3833 | 39 | EGF-like 1 | ||||||||
| Domain | 3835 – 4018 | 184 | Laminin G-like | ||||||||
| Domain | 4021 – 4058 | 38 | EGF-like 2 | ||||||||
| Domain | 4060 – 4096 | 37 | EGF-like 3 | ||||||||
| Domain | 4098 – 4134 | 37 | EGF-like 4; calcium-binding Potential | ||||||||
| Compositional bias | 4438 – 4509 | 72 | Pro-rich | ||||||||
Amino acid modifications | |||||||||||
| Glycosylation | 49 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 342 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 482 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 563 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 668 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 800 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 880 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 899 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1007 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1368 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1430 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1752 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1945 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1994 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 1997 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 2209 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 2293 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 2332 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 2468 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 3001 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 3202 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 3330 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 3450 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 3619 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 3742 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 3927 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Disulfide bond | 3799 ↔ 3810 | By similarity | |||||||||
| Disulfide bond | 3804 ↔ 3822 | By similarity | |||||||||
| Disulfide bond | 3824 ↔ 3832 | By similarity | |||||||||
| Disulfide bond | 3985 ↔ 4018 | By similarity | |||||||||
| Disulfide bond | 4025 ↔ 4036 | By similarity | |||||||||
| Disulfide bond | 4030 ↔ 4046 | By similarity | |||||||||
| Disulfide bond | 4048 ↔ 4057 | By similarity | |||||||||
| Disulfide bond | 4064 ↔ 4075 | By similarity | |||||||||
| Disulfide bond | 4069 ↔ 4084 | By similarity | |||||||||
| Disulfide bond | 4086 ↔ 4095 | By similarity | |||||||||
| Disulfide bond | 4102 ↔ 4113 | By similarity | |||||||||
| Disulfide bond | 4107 ↔ 4122 | By similarity | |||||||||
| Disulfide bond | 4124 ↔ 4133 | By similarity | |||||||||
Natural variations | |||||||||||
| Alternative sequence | 1204 – 1260 | 57 | LITTT…EKVYQ → SCSVAQAGMQWHDRSSLQSR TPGFKGYPCLSLLSSWDYRH APPCPATFLNS in isoform 2. | VSP_032327 | |||||||
| Alternative sequence | 1261 – 4589 | 3329 | Missing in isoform 2. | VSP_032328 | |||||||
| Alternative sequence | 4351 – 4382 | 32 | Missing in isoform 3. | VSP_040467 | |||||||
| Natural variant | 412 | 1 | S → F. Corresponds to variant rs10830902 [ dbSNP | Ensembl ]. | VAR_039851 | |||||||
| Natural variant | 462 | 1 | I → V. Corresponds to variant rs16917409 [ dbSNP | Ensembl ]. | VAR_039852 | |||||||
| Natural variant | 1167 | 1 | V → G. Corresponds to variant rs11821058 [ dbSNP | Ensembl ]. | VAR_039853 | |||||||
| Natural variant | 1726 | 1 | Q → R. Corresponds to variant rs7949157 [ dbSNP | Ensembl ]. | VAR_039854 | |||||||
| Natural variant | 2293 | 1 | N → S. Corresponds to variant rs16918105 [ dbSNP | Ensembl ]. | VAR_039855 | |||||||
| Natural variant | 2622 | 1 | V → F. Corresponds to variant rs17615477 [ dbSNP | Ensembl ]. | VAR_039856 | |||||||
| Natural variant | 2755 | 1 | I → V. Corresponds to variant rs3847531 [ dbSNP | Ensembl ]. | VAR_039857 | |||||||
| Natural variant | 3518 | 1 | V → L. Corresponds to variant rs10765565 [ dbSNP | Ensembl ]. | VAR_039858 | |||||||
| Natural variant | 3812 | 1 | S → G. Ref.3 Corresponds to variant rs4753069 [ dbSNP | Ensembl ]. | VAR_039859 | |||||||
Sequences
| ||||||||||||||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "Human chromosome 11 DNA sequence and analysis including novel gene identification." Taylor T.D., Noguchi H., Totoki Y., Toyoda A., Kuroki Y., Dewar K., Lloyd C., Itoh T., Takeda T., Kim D.-W., She X., Barlow K.F., Bloom T., Bruford E., Chang J.L., Cuomo C.A., Eichler E., FitzGerald M.G. Sakaki Y.Nature 440:497-500(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [2] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1026-4589 (ISOFORM 2). Tissue: Brain. |
| [3] | "Mammalian fat3: a large protein that contains multiple cadherin and EGF-like motifs." Mitsui K., Nakajima D., Ohara O., Nakayama M. Biochem. Biophys. Res. Commun. 290:1260-1266(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 3493-4589 (ISOFORM 1), VARIANT GLY-3812. Tissue: Brain. |
| [4] | "Comparative integromics on FAT1, FAT2, FAT3 and FAT4." Katoh Y., Katoh M. Int. J. Mol. Med. 18:523-528(2006) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION, TISSUE SPECIFICITY. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AP000722 Genomic DNA. No translation available. AP000805 Genomic DNA. No translation available. AP002514 Genomic DNA. No translation available. AP003171 Genomic DNA. No translation available. AP003718 Genomic DNA. No translation available. BC016722 mRNA. Translation: AAH16722.1. Different initiation. AB076400 mRNA. Translation: BAB86868.1. |
| IPI | IPI00847978. IPI00888216. IPI00973508. |
| RefSeq | NP_001008781.2. NM_001008781.2. |
| UniGene | Hs.98523. |
3D structure databases | |
| HSSP | HSSP built from PDB template 1TOZ based on UniProtKB P46531. |
| ProteinModelPortal | Q8TDW7. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | 9606.ENSP00000387040. |
PTM databases | |
| PhosphoSite | Q8TDW7. |
Polymorphism databases | |
| DMDM | 172045818. |
Proteomic databases | |
| PaxDb | Q8TDW7. |
| PRIDE | Q8TDW7. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000298047; ENSP00000298047; ENSG00000165323. ENST00000409404; ENSP00000387040; ENSG00000165323. |
| GeneID | 120114. |
| KEGG | hsa:120114. |
| UCSC | uc001pdj.4. human. |
Organism-specific databases | |
| CTD | 120114. |
| GeneCards | GC11P092164. |
| HGNC | HGNC:23112. FAT3. |
| HPA | HPA026878. |
| MIM | 612483. gene. |
| neXtProt | NX_Q8TDW7. |
| PharmGKB | PA134962612. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG12793. |
| HOGENOM | HOG000046499. |
| HOVERGEN | HBG005641. |
| InParanoid | Q8TDW7. |
| KO | K16506. |
| OMA | DNGWMVT. |
| OrthoDB | EOG4CNQQ3. |
Gene expression databases | |
| ArrayExpress | Q8TDW7. |
| Bgee | Q8TDW7. |
| CleanEx | HS_FAT3. |
| Genevestigator | Q8TDW7. |
Family and domain databases | |
| Gene3D | 2.60.120.200. 1 hit. 2.60.40.60. 34 hits. |
| InterPro | IPR002126. Cadherin. IPR015919. Cadherin-like. IPR020894. Cadherin_CS. IPR008985. ConA-like_lec_gl_sf. IPR013320. ConA-like_subgrp. IPR000742. EG-like_dom. IPR001881. EGF-like_Ca-bd. IPR013032. EGF-like_CS. IPR000152. EGF-type_Asp/Asn_hydroxyl_site. IPR018097. EGF_Ca-bd_CS. IPR001791. Laminin_G. [Graphical view] |
| Pfam | PF00028. Cadherin. 26 hits. PF07645. EGF_CA. 1 hit. PF02210. Laminin_G_2. 1 hit. [Graphical view] |
| PRINTS | PR00205. CADHERIN. |
| SMART | SM00112. CA. 32 hits. SM00181. EGF. 2 hits. SM00179. EGF_CA. 1 hit. SM00282. LamG. 1 hit. [Graphical view] |
| SUPFAM | SSF49313. Cadherin. 34 hits. SSF49899. ConA_like_lec_gl. 1 hit. |
| PROSITE | PS00010. ASX_HYDROXYL. 1 hit. PS00232. CADHERIN_1. 19 hits. PS50268. CADHERIN_2. 32 hits. PS00022. EGF_1. 3 hits. PS01186. EGF_2. 1 hit. PS50026. EGF_3. 4 hits. PS01187. EGF_CA. 1 hit. PS50025. LAM_G_DOMAIN. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | FAT3. human. |
| GenomeRNAi | 120114. |
| NextBio | 80524. |
| SOURCE | Search... |
Entry information
| Entry name | FAT3_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q8TDW7 Secondary accession number(s): B5MDB0, Q96AU6 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 11 Human chromosome 11: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
