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Reviewed, UniProtKB/Swiss-Prot Q8TD19 (NEK9_HUMAN)

Last modified February 9, 2010. Version 90. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (6) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Serine/threonine-protein kinase Nek9
    EC=2.7.11.1
Alternative name(s):
    Never in mitosis A-related kinase 9
      Short name=NimA-related protein kinase 9
    Nercc1 kinase
    NimA-related kinase 8
      Short name=Nek8
Gene names
Name: NEK9
Synonyms: KIAA1995, NEK8, NERCC
OrganismHomo sapiens (Human) [Complete proteome]
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length979 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level.

General annotation (Comments)

Function

Pleiotropic regulator of mitotic progression, participating in the control of spindle dynamics and chromosome separation. Phosphorylates different histones, myelin basic protein, beta-casein, and BICD2. Phosphorylates histone H3 on serine and threonine residues and beta-casein on serine residues. Important for G1/S transition and S phase progression. Ref.6

Catalytic activity

ATP + a protein = ADP + a phosphoprotein.

Cofactor

Magnesium.

Enzyme regulation

Activated during mitosis by intramolecular autophosphorylation. Activity and autophosphorylation is activated by manganese >> magnesium ions. Sensitive to increasing concentration of detergents. It is not cell-cycle regulated but activity is higher in G0-arrested cells.

Subunit structure

Homodimer. Binds to Ran GTPase. Has a greater affinity for Ran-GDP over Ran-GTP. Interacts with NEK6, NEK7 and BICD2. Interacts with SSRP1 and SUPT16H, the 2 subunits of the FACT complex. Ref.6

Subcellular location

Cytoplasm. Nucleus Ref.6.

Tissue specificity

Most abundant in heart, liver, kidney and testis. Also expressed in smooth muscle cells and fibroblasts.

Developmental stage

Expression varied mildly across the cell cycle, with highest expression observed in G1 and stationary-phase cells.

Domain

Dimerizes through its coiled-coil domain.

Post-translational modification

Autophosphorylated on serine and threonine residues. When complexed with FACT, exhibits markedly elevated phosphorylation on Thr-210. During mitosis, not phosphorylated on Thr-210. Phosphorylated by CDC2 in vitro. Ref.6 Ref.7 Ref.8 Ref.9 Ref.10 Ref.12 Ref.14

Sequence similarities

Belongs to the protein kinase superfamily. NEK Ser/Thr protein kinase family. NIMA subfamily.

Contains 1 protein kinase domain.

Contains 6 RCC1 repeats.

Sequence caution

The sequence AAD31936.1 differs from that shown. Reason: Erroneous gene model prediction.

Binary interactions

With

Entry

#Exp.

IntAct

Notes

GABARAPL2P605201EBI-1044009,EBI-720116
NEK6Q9HC981EBI-1044009,EBI-740364

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 979979Serine/threonine-protein kinase Nek9
PRO_0000086435

Regions

Domain52 – 308257Protein kinase
Repeat388 – 44457RCC1 1
Repeat445 – 49854RCC1 2
Repeat499 – 55052RCC1 3
Repeat551 – 61565RCC1 4
Repeat616 – 66853RCC1 5
Repeat669 – 72658RCC1 6
Nucleotide binding58 – 669ATP By similarity
Region732 – 891160Interaction with NEK6
Coiled coil892 – 93948 Potential
Compositional bias752 – 7609Poly-Gly
Compositional bias765 – 888124Pro/Ser/Thr-rich

Sites

Active site1761Proton acceptor By similarity
Binding site811ATP

Amino acid modifications

Modified residue21Phosphoserine Ref.9
Modified residue131Phosphoserine Ref.9
Modified residue161Phosphoserine Ref.9
Modified residue201Phosphoserine Ref.9
Modified residue281Phosphoserine
Modified residue291Phosphoserine Ref.9
Modified residue521Phosphotyrosine
Modified residue761Phosphoserine Ref.9
Modified residue2031Phosphoserine
Modified residue2051Phosphotyrosine
Modified residue2101Phosphothreonine; by autocatalysis Probable
Modified residue2541Phosphothreonine Ref.9
Modified residue3311Phosphoserine Ref.9
Modified residue3321Phosphoserine Ref.8 Ref.9
Modified residue3331Phosphothreonine Ref.8 Ref.10 Ref.12 Ref.14
Modified residue3351Phosphothreonine
Modified residue3571Phosphoserine
Modified residue3581Phosphothreonine Ref.8
Modified residue4131Phosphoserine
Modified residue7311N6-acetyllysine Ref.15
Modified residue7351Phosphoserine
Modified residue7411Phosphoserine Ref.9
Modified residue7491Phosphoserine
Modified residue7501Phosphoserine Ref.9
Modified residue7931Phosphoserine Ref.9
Modified residue7951Phosphothreonine
Modified residue8011Phosphoserine
Modified residue8271Phosphoserine Ref.9
Modified residue8291Phosphoserine Ref.9
Modified residue8321Phosphoserine
Modified residue8361Phosphoserine Ref.9
Modified residue8381Phosphoserine
Modified residue8681Phosphoserine Ref.8 Ref.9
Modified residue8691Phosphoserine Ref.7
Modified residue8861Phosphothreonine Ref.9
Modified residue9441Phosphoserine Ref.9
Modified residue9741Phosphoserine
Modified residue9781Phosphoserine Ref.9

Natural variations

Natural variant4291R → H: dbSNP rs10146482. Ref.1 Ref.3 Ref.16
VAR_027900
Natural variant8281P → T: dbSNP rs36014869. Ref.16
VAR_040926
Natural variant8701P → S in a lung neuroendocrine carcinoma sample; somatic mutation. Ref.16
VAR_040927

Experimental info

Mutagenesis811K → M: Loss of activity and autophosphorylation. Ref.2
Mutagenesis2101T → A: Significant reduction of autophosphorylation. Ref.1
Mutagenesis2141T → A: No effect on autophosphorylation. Ref.1
Sequence conflict3511V → I in AAL87410. Ref.2
Sequence conflict9671W → G in AAL87410. Ref.2

Sequences

Sequence LengthMass (Da)Tools
Q8TD19-1 [UniParc].

Last modified October 17, 2006. Version 2.
Checksum: 8583FDDE599324A2

FASTA979107,168
        10         20         30         40         50         60 
MSVLGEYERH CDSINSDFGS ESGGCGDSSP GPSASQGPRA GGGAAEQEEL HYIPIRVLGR 

        70         80         90        100        110        120 
GAFGEATLYR RTEDDSLVVW KEVDLTRLSE KERRDALNEI VILALLQHDN IIAYYNHFMD 

       130        140        150        160        170        180 
NTTLLIELEY CNGGNLYDKI LRQKDKLFEE EMVVWYLFQI VSAVSCIHKA GILHRDIKTL 

       190        200        210        220        230        240 
NIFLTKANLI KLGDYGLAKK LNSEYSMAET LVGTPYYMSP ELCQGVKYNF KSDIWAVGCV 

       250        260        270        280        290        300 
IFELLTLKRT FDATNPLNLC VKIVQGIRAM EVDSSQYSLE LIQMVHSCLD QDPEQRPTAD 

       310        320        330        340        350        360 
ELLDRPLLRK RRREMEEKVT LLNAPTKRPR SSTVTEAPIA VVTSRTSEVY VWGGGKSTPQ 

       370        380        390        400        410        420 
KLDVIKSGCS ARQVCAGNTH FAVVTVEKEL YTWVNMQGGT KLHGQLGHGD KASYRQPKHV 

       430        440        450        460        470        480 
EKLQGKAIRQ VSCGDDFTVC VTDEGQLYAF GSDYYGCMGV DKVAGPEVLE PMQLNFFLSN 

       490        500        510        520        530        540 
PVEQVSCGDN HVVVLTRNKE VYSWGCGEYG RLGLDSEEDY YTPQKVDVPK ALIIVAVQCG 

       550        560        570        580        590        600 
CDGTFLLTQS GKVLACGLNE FNKLGLNQCM SGIINHEAYH EVPYTTSFTL AKQLSFYKIR 

       610        620        630        640        650        660 
TIAPGKTHTA AIDERGRLLT FGCNKCGQLG VGNYKKRLGI NLLGGPLGGK QVIRVSCGDE 

       670        680        690        700        710        720 
FTIAATDDNH IFAWGNGGNG RLAMTPTERP HGSDICTSWP RPIFGSLHHV PDLSCRGWHT 

       730        740        750        760        770        780 
ILIVEKVLNS KTIRSNSSGL SIGTVFQSSS PGGGGGGGGG EEEDSQQESE TPDPSGGFRG 

       790        800        810        820        830        840 
TMEADRGMEG LISPTEAMGN SNGASSSCPG WLRKELENAE FIPMPDSPSP LSAAFSESEK 

       850        860        870        880        890        900 
DTLPYEELQG LKVASEAPLE HKPQVEASSP RLNPAVTCAG KGTPLTPPAC ACSSLQVEVE 

       910        920        930        940        950        960 
RLQGLVLKCL AEQQKLQQEN LQIFTQLQKL NKKLEGGQQV GMHSKGTQTA KEEMEMDPKP 

       970 
DLDSDSWCLL GTDSCRPSL 

« Hide

References

« Hide 'large scale' references
[1]"Purification, cloning, and characterization of Nek8, a novel NIMA-related kinase, and its candidate substrate Bicd2."
Holland P.M., Milne A., Garka K., Johnson R.S., Willis C., Sims J.E., Rauch C.T., Bird T.A., Virca G.D.
J. Biol. Chem. 277:16229-16240(2002) [PubMed: 11864968] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA], CHARACTERIZATION, PROTEIN SEQUENCE OF 61-70; 318-327; 331-352 AND 511-530, MUTAGENESIS OF THR-210 AND THR-214, VARIANT HIS-429.
Tissue: Dendritic cell and Fibroblast.
[2]"Nercc1, a mammalian NIMA-family kinase, binds the Ran GTPase and regulates mitotic progression."
Roig J., Mikhailov A., Belham C., Avruch J.
Genes Dev. 16:1640-1658(2002) [PubMed: 12101123] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA], CHARACTERIZATION, PARTIAL PROTEIN SEQUENCE, MUTAGENESIS OF LYS-81.
[3]"Characterization of size-fractionated cDNA libraries generated by the in vitro recombination-assisted method."
Ohara O., Nagase T., Mitsui G., Kohga H., Kikuno R., Hiraoka S., Takahashi Y., Kitajima S., Saga Y., Koseki H.
DNA Res. 9:47-57(2002) [PubMed: 12056414] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT HIS-429.
Tissue: Brain.
[4]"The DNA sequence and analysis of human chromosome 14."
Heilig R., Eckenberg R., Petit J.-L., Fonknechten N., Da Silva C., Cattolico L., Levy M., Barbe V., De Berardinis V., Ureta-Vidal A., Pelletier E., Vico V., Anthouard V., Rowen L., Madan A., Qin S., Sun H., Du H. expand/collapse author list , Pepin K., Artiguenave F., Robert C., Cruaud C., Bruels T., Jaillon O., Friedlander L., Samson G., Brottier P., Cure S., Segurens B., Aniere F., Samain S., Crespeau H., Abbasi N., Aiach N., Boscus D., Dickhoff R., Dors M., Dubois I., Friedman C., Gouyvenoux M., James R., Madan A., Mairey-Estrada B., Mangenot S., Martins N., Menard M., Oztas S., Ratcliffe A., Shaffer T., Trask B., Vacherie B., Bellemere C., Belser C., Besnard-Gonnet M., Bartol-Mavel D., Boutard M., Briez-Silla S., Combette S., Dufosse-Laurent V., Ferron C., Lechaplais C., Louesse C., Muselet D., Magdelenat G., Pateau E., Petit E., Sirvain-Trukniewicz P., Trybou A., Vega-Czarny N., Bataille E., Bluet E., Bordelais I., Dubois M., Dumont C., Guerin T., Haffray S., Hammadi R., Muanga J., Pellouin V., Robert D., Wunderle E., Gauguet G., Roy A., Sainte-Marthe L., Verdier J., Verdier-Discala C., Hillier L.W., Fulton L., McPherson J., Matsuda F., Wilson R., Scarpelli C., Gyapay G., Wincker P., Saurin W., Quetier F., Waterston R., Hood L., Weissenbach J.
Nature 421:601-607(2003) [PubMed: 12508121] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[5]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Brain.
[6]"Nek9, a novel FACT-associated protein, modulates interphase progression."
Tan B.C.-M., Lee S.-C.
J. Biol. Chem. 279:9321-9330(2004) [PubMed: 14660563] [Abstract]
Cited for: FUNCTION, INTERACTION WITH SSRP1 AND SUPT16H, SUBCELLULAR LOCATION, PHOSPHORYLATION AT THR-210.
[7]"Global, in vivo, and site-specific phosphorylation dynamics in signaling networks."
Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M.
Cell 127:635-648(2006) [PubMed: 17081983] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-869, MASS SPECTROMETRY.
Tissue: Epithelium.
[8]"Proteomics analysis of protein kinases by target class-selective prefractionation and tandem mass spectrometry."
Wissing J., Jaensch L., Nimtz M., Dieterich G., Hornberger R., Keri G., Wehland J., Daub H.
Mol. Cell. Proteomics 6:537-547(2007) [PubMed: 17192257] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-332; THR-333; THR-358 AND SER-868, MASS SPECTROMETRY.
[9]"Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle."
Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M.
Mol. Cell 31:438-448(2008) [PubMed: 18691976] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-2; SER-13; SER-16; SER-20; SER-29; SER-76; THR-254; SER-331; SER-332; SER-741; SER-750; SER-793; SER-827; SER-829; SER-836; SER-868; THR-886; SER-944 AND SER-978, MASS SPECTROMETRY.
[10]"A quantitative atlas of mitotic phosphorylation."
Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P.
Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-333, MASS SPECTROMETRY.
[11]Colinge J., Superti-Furga G., Bennett K.L.
Submitted (OCT-2008) to UniProtKB
Cited for: IDENTIFICATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY.
[12]"Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach."
Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S.
Anal. Chem. 81:4493-4501(2009) [PubMed: 19413330] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-333, MASS SPECTROMETRY.
[13]"Large-scale proteomics analysis of the human kinome."
Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G., Mann M., Daub H.
Mol. Cell. Proteomics 8:1751-1764(2009) [PubMed: 19369195] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-2; SER-13; SER-16; SER-20; SER-28; SER-29; TYR-52; SER-76; SER-203; TYR-205; THR-254; SER-331; SER-332; THR-333; THR-335; SER-357; THR-358; SER-413; SER-735; SER-749; SER-750; SER-793; THR-795; SER-801; SER-827; SER-829; SER-832; SER-836; SER-838; SER-868; SER-869; THR-886; SER-944; SER-974 AND SER-978, MASS SPECTROMETRY.
[14]"Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions."
Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K.
Sci. Signal. 2:RA46-RA46(2009) [PubMed: 19690332] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-333, MASS SPECTROMETRY.
Tissue: T-cell.
[15]"Lysine acetylation targets protein complexes and co-regulates major cellular functions."
Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T., Olsen J.V., Mann M.
Science 325:834-840(2009) [PubMed: 19608861] [Abstract]
Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-731, MASS SPECTROMETRY.
[16]"Patterns of somatic mutation in human cancer genomes."
Greenman C., Stephens P., Smith R., Dalgliesh G.L., Hunter C., Bignell G., Davies H., Teague J., Butler A., Stevens C., Edkins S., O'Meara S., Vastrik I., Schmidt E.E., Avis T., Barthorpe S., Bhamra G., Buck G. expand/collapse author list , Choudhury B., Clements J., Cole J., Dicks E., Forbes S., Gray K., Halliday K., Harrison R., Hills K., Hinton J., Jenkinson A., Jones D., Menzies A., Mironenko T., Perry J., Raine K., Richardson D., Shepherd R., Small A., Tofts C., Varian J., Webb T., West S., Widaa S., Yates A., Cahill D.P., Louis D.N., Goldstraw P., Nicholson A.G., Brasseur F., Looijenga L., Weber B.L., Chiew Y.-E., DeFazio A., Greaves M.F., Green A.R., Campbell P., Birney E., Easton D.F., Chenevix-Trench G., Tan M.-H., Khoo S.K., Teh B.T., Yuen S.T., Leung S.Y., Wooster R., Futreal P.A., Stratton M.R.
Nature 446:153-158(2007) [PubMed: 17344846] [Abstract]
Cited for: VARIANTS [LARGE SCALE ANALYSIS] HIS-429; THR-828 AND SER-870.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY048580 mRNA. Translation: AAL05428.1.
AY080896 mRNA. Translation: AAL87410.1.
AB082526 mRNA. Translation: BAC02704.1. Different initiation.
AC007055 Genomic DNA. Translation: AAD31936.1. Sequence problems.
AC007055 Genomic DNA. Translation: AAD31938.1.
AC007055 Genomic DNA. Translation: AAD31939.1.
AC007055 Genomic DNA. Translation: AAD31940.1.
BC009336 mRNA. Translation: AAH09336.2.
BC093881 mRNA. Translation: AAH93881.1.
BC112101 mRNA. Translation: AAI12102.1.
IPIIPI00301609.
RefSeqNP_149107.4.
UniGeneHs.719118

3D structure databases

SMRQ8TD19. Positions 51-311, 342-726.
ModBaseSearch...

Protein-protein interaction databases

IntActQ8TD19. 10 interactions.
STRINGQ8TD19.

PTM databases

PhosphoSiteQ8TD19.

Proteomic databases

PeptideAtlasQ8TD19.
PRIDEQ8TD19.

Genome annotation databases

EnsemblENST00000238616; ENSP00000238616; ENSG00000119638; Homo sapiens. [Genome view]
GeneID91754.
KEGGhsa:91754.
UCSCuc001xrl.1. human.

Organism-specific databases

CTD91754.
GeneCardsGC14M074618.
H-InvDBHIX0011824.
HGNCHGNC:18591. NEK9.
HPAHPA001405.
MIM609798. gene.
PharmGKBPA38593.
HUGESearch...
GenAtlasSearch...

Phylogenomic databases

eggNOGprNOG13112.
HOVERGENQ8TD19.
InParanoidQ8TD19.
OMAPGKTHTA.
OrthoDBEOG9HHRN4.
PhylomeDBQ8TD19.

Enzyme and pathway databases

BRENDA2.7.11.1. 247.

Gene expression databases

ArrayExpressQ8TD19.
BgeeQ8TD19.
CleanExHS_NEK8.
HS_NEK9.
GenevestigatorQ8TD19.
GermOnlineENSG00000119638. Homo sapiens.

Family and domain databases

InterProIPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_cat_dom.
IPR000408. Reg_chr_condens.
IPR009091. Reg_csome_cond/b-lactamase_inh.
IPR017442. Se/Thr_prot_kinase-like_dom.
IPR008271. Ser/Thr_prot_kinase_AS.
IPR002290. Ser/Thr_prot_kinase_dom.
[Graphical view]
Gene3DG3DSA:2.130.10.30. Reg_csome_cond/b-lactamase_inh. 1 hit.
PfamPF00069. Pkinase. 1 hit.
PF00415. RCC1. 4 hits.
[Graphical view]
SMARTSM00220. S_TKc. 1 hit.
[Graphical view]
PROSITEPS00107. PROTEIN_KINASE_ATP. False negative.
PS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00108. PROTEIN_KINASE_ST. 1 hit.
PS00625. RCC1_1. False negative.
PS00626. RCC1_2. False negative.
PS50012. RCC1_3. 6 hits.
[Graphical view]
ProtoNetSearch...

Other Resources

NextBio77443.
SOURCESearch...

Entry information

Entry nameNEK9_HUMAN
AccessionPrimary (citable) accession number: Q8TD19
Secondary accession number(s): Q52LK6 expand/collapse secondary AC list , Q8NCN0, Q8TCY4, Q9UPI4, Q9Y6S4, Q9Y6S5, Q9Y6S6
Entry history
Integrated into UniProtKB/Swiss-Prot: August 15, 2003
Last sequence update: October 17, 2006
Last modified: February 9, 2010
This is version 90 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHPI (Human Proteome Initiative)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Relevant documents

Human chromosome 14

Human chromosome 14: entries, gene names and cross-references to MIM

Human entries with polymorphisms or disease mutations

List of human entries with polymorphisms or disease mutations

Human polymorphisms and disease mutations

Index of human polymorphisms and disease mutations

MIM cross-references

Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

Human and mouse protein kinases

Human and mouse protein kinases: classification and index

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents