Q8TD19 (NEK9_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 111.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Serine/threonine-protein kinase Nek9 EC=2.7.11.1 Alternative name(s): Nercc1 kinase Never in mitosis A-related kinase 9 Short name=NimA-related protein kinase 9 NimA-related kinase 8 Short name=Nek8 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 979 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Pleiotropic regulator of mitotic progression, participating in the control of spindle dynamics and chromosome separation. Phosphorylates different histones, myelin basic protein, beta-casein, and BICD2. Phosphorylates histone H3 on serine and threonine residues and beta-casein on serine residues. Important for G1/S transition and S phase progression. Phosphorylates NEK6 and NEK7 and stimulates their activity by releasing the autoinhibitory functions of Tyr-108 and Tyr-97 respectively. Ref.6 Ref.7 Ref.14 |
| Catalytic activity | ATP + a protein = ADP + a phosphoprotein. |
| Cofactor | Magnesium. |
| Enzyme regulation | Activated during mitosis by intramolecular autophosphorylation. Activity and autophosphorylation is activated by manganese >> magnesium ions. Sensitive to increasing concentration of detergents. It is not cell-cycle regulated but activity is higher in G0-arrested cells. |
| Subunit structure | Homodimer. Binds to Ran GTPase. Has a greater affinity for Ran-GDP over Ran-GTP. Interacts with NEK6, NEK7 and BICD2. Interacts with SSRP1 and SUPT16H, the 2 subunits of the FACT complex. Ref.7 Ref.10 |
| Subcellular location | |
| Tissue specificity | Most abundant in heart, liver, kidney and testis. Also expressed in smooth muscle cells and fibroblasts. |
| Developmental stage | Expression varied mildly across the cell cycle, with highest expression observed in G1 and stationary-phase cells. |
| Domain | Dimerizes through its coiled-coil domain. |
| Post-translational modification | Autophosphorylated on serine and threonine residues. When complexed with FACT, exhibits markedly elevated phosphorylation on Thr-210. During mitosis, not phosphorylated on Thr-210. Phosphorylated by CDK1 in vitro. Ref.7 Ref.8 Ref.9 Ref.11 Ref.12 Ref.13 Ref.15 Ref.16 |
| Sequence similarities | Belongs to the protein kinase superfamily. NEK Ser/Thr protein kinase family. NIMA subfamily. Contains 1 protein kinase domain. Contains 6 RCC1 repeats. |
| Sequence caution | The sequence AAD31936.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence BAC02704.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| GABARAP | O95166 | 5 | EBI-1044009,EBI-712001 | |
| GABARAPL1 | Q9H0R8 | 6 | EBI-1044009,EBI-746969 | |
| GABARAPL2 | P60520 | 4 | EBI-1044009,EBI-720116 | |
| MAP1LC3B | Q9GZQ8 | 2 | EBI-1044009,EBI-373144 | |
| MAP1LC3C | Q9BXW4 | 2 | EBI-1044009,EBI-2603996 |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 979 | 979 | Serine/threonine-protein kinase Nek9 | PRO_0000086435 | |||||
Regions | |||||||||
| Domain | 52 – 308 | 257 | Protein kinase | ||||||
| Repeat | 388 – 444 | 57 | RCC1 1 | ||||||
| Repeat | 445 – 498 | 54 | RCC1 2 | ||||||
| Repeat | 499 – 550 | 52 | RCC1 3 | ||||||
| Repeat | 551 – 615 | 65 | RCC1 4 | ||||||
| Repeat | 616 – 668 | 53 | RCC1 5 | ||||||
| Repeat | 669 – 726 | 58 | RCC1 6 | ||||||
| Nucleotide binding | 58 – 66 | 9 | ATP By similarity | ||||||
| Region | 732 – 891 | 160 | Interaction with NEK6 | ||||||
| Coiled coil | 892 – 939 | 48 | Potential | ||||||
| Compositional bias | 752 – 760 | 9 | Poly-Gly | ||||||
| Compositional bias | 765 – 888 | 124 | Pro/Ser/Thr-rich | ||||||
Sites | |||||||||
| Active site | 176 | 1 | Proton acceptor By similarity | ||||||
| Binding site | 81 | 1 | ATP | ||||||
Amino acid modifications | |||||||||
| Modified residue | 2 | 1 | Phosphoserine Ref.11 Ref.15 | ||||||
| Modified residue | 13 | 1 | Phosphoserine Ref.11 Ref.15 | ||||||
| Modified residue | 16 | 1 | Phosphoserine Ref.11 Ref.15 | ||||||
| Modified residue | 20 | 1 | Phosphoserine Ref.11 Ref.15 | ||||||
| Modified residue | 28 | 1 | Phosphoserine Ref.15 | ||||||
| Modified residue | 29 | 1 | Phosphoserine Ref.11 Ref.15 | ||||||
| Modified residue | 52 | 1 | Phosphotyrosine Ref.15 | ||||||
| Modified residue | 76 | 1 | Phosphoserine Ref.11 Ref.15 | ||||||
| Modified residue | 203 | 1 | Phosphoserine Ref.15 | ||||||
| Modified residue | 205 | 1 | Phosphotyrosine Ref.15 | ||||||
| Modified residue | 210 | 1 | Phosphothreonine; by autocatalysis Probable | ||||||
| Modified residue | 254 | 1 | Phosphothreonine Ref.11 Ref.15 | ||||||
| Modified residue | 331 | 1 | Phosphoserine Ref.11 Ref.15 | ||||||
| Modified residue | 332 | 1 | Phosphoserine Ref.9 Ref.11 Ref.15 | ||||||
| Modified residue | 333 | 1 | Phosphothreonine Ref.9 Ref.12 Ref.13 Ref.15 Ref.16 | ||||||
| Modified residue | 335 | 1 | Phosphothreonine Ref.15 | ||||||
| Modified residue | 357 | 1 | Phosphoserine Ref.15 | ||||||
| Modified residue | 358 | 1 | Phosphothreonine Ref.9 Ref.15 | ||||||
| Modified residue | 413 | 1 | Phosphoserine Ref.15 | ||||||
| Modified residue | 731 | 1 | N6-acetyllysine Ref.17 | ||||||
| Modified residue | 735 | 1 | Phosphoserine Ref.15 | ||||||
| Modified residue | 741 | 1 | Phosphoserine Ref.11 | ||||||
| Modified residue | 749 | 1 | Phosphoserine Ref.15 | ||||||
| Modified residue | 750 | 1 | Phosphoserine Ref.11 Ref.15 | ||||||
| Modified residue | 793 | 1 | Phosphoserine Ref.11 Ref.15 | ||||||
| Modified residue | 795 | 1 | Phosphothreonine Ref.15 | ||||||
| Modified residue | 801 | 1 | Phosphoserine Ref.15 | ||||||
| Modified residue | 827 | 1 | Phosphoserine Ref.11 Ref.15 | ||||||
| Modified residue | 829 | 1 | Phosphoserine Ref.11 Ref.15 | ||||||
| Modified residue | 832 | 1 | Phosphoserine Ref.15 | ||||||
| Modified residue | 836 | 1 | Phosphoserine Ref.11 Ref.15 | ||||||
| Modified residue | 838 | 1 | Phosphoserine Ref.15 | ||||||
| Modified residue | 868 | 1 | Phosphoserine Ref.9 Ref.11 Ref.15 | ||||||
| Modified residue | 869 | 1 | Phosphoserine Ref.8 Ref.15 | ||||||
| Modified residue | 886 | 1 | Phosphothreonine Ref.11 Ref.15 | ||||||
| Modified residue | 944 | 1 | Phosphoserine Ref.11 Ref.15 | ||||||
| Modified residue | 974 | 1 | Phosphoserine Ref.15 | ||||||
| Modified residue | 978 | 1 | Phosphoserine Ref.11 Ref.15 | ||||||
Natural variations | |||||||||
| Natural variant | 429 | 1 | R → H. Ref.1 Ref.3 Ref.19 Corresponds to variant rs10146482 [ dbSNP | Ensembl ]. | VAR_027900 | |||||
| Natural variant | 828 | 1 | P → T. Ref.19 Corresponds to variant rs36014869 [ dbSNP | Ensembl ]. | VAR_040926 | |||||
| Natural variant | 870 | 1 | P → S in a lung neuroendocrine carcinoma sample; somatic mutation. Ref.19 | VAR_040927 | |||||
Experimental info | |||||||||
| Mutagenesis | 81 | 1 | K → M: Loss of activity and autophosphorylation. Ref.2 | ||||||
| Mutagenesis | 210 | 1 | T → A: Significant reduction of autophosphorylation. Ref.1 | ||||||
| Mutagenesis | 214 | 1 | T → A: No effect on autophosphorylation. Ref.1 | ||||||
| Sequence conflict | 351 | 1 | V → I in AAL87410. Ref.2 | ||||||
| Sequence conflict | 967 | 1 | W → G in AAL87410. Ref.2 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Purification, cloning, and characterization of Nek8, a novel NIMA-related kinase, and its candidate substrate Bicd2." Holland P.M., Milne A., Garka K., Johnson R.S., Willis C., Sims J.E., Rauch C.T., Bird T.A., Virca G.D. J. Biol. Chem. 277:16229-16240(2002) [PubMed: 11864968] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], CHARACTERIZATION, PROTEIN SEQUENCE OF 61-70; 318-327; 331-352 AND 511-530, MUTAGENESIS OF THR-210 AND THR-214, VARIANT HIS-429. Tissue: Dendritic cell and Fibroblast. |
| [2] | "Nercc1, a mammalian NIMA-family kinase, binds the Ran GTPase and regulates mitotic progression." Roig J., Mikhailov A., Belham C., Avruch J. Genes Dev. 16:1640-1658(2002) [PubMed: 12101123] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], CHARACTERIZATION, PARTIAL PROTEIN SEQUENCE, MUTAGENESIS OF LYS-81. |
| [3] | "Characterization of size-fractionated cDNA libraries generated by the in vitro recombination-assisted method." Ohara O., Nagase T., Mitsui G., Kohga H., Kikuno R., Hiraoka S., Takahashi Y., Kitajima S., Saga Y., Koseki H. DNA Res. 9:47-57(2002) [PubMed: 12056414] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT HIS-429. Tissue: Brain. |
| [4] | "The DNA sequence and analysis of human chromosome 14." Heilig R., Eckenberg R., Petit J.-L., Fonknechten N., Da Silva C., Cattolico L., Levy M., Barbe V., De Berardinis V., Ureta-Vidal A., Pelletier E., Vico V., Anthouard V., Rowen L., Madan A., Qin S., Sun H., Du H. Weissenbach J.Nature 421:601-607(2003) [PubMed: 12508121] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Brain. |
| [6] | "A mitotic cascade of NIMA family kinases. Nercc1/Nek9 activates the Nek6 and Nek7 kinases." Belham C., Roig J., Caldwell J.A., Aoyama Y., Kemp B.E., Comb M., Avruch J. J. Biol. Chem. 278:34897-34909(2003) [PubMed: 12840024] [Abstract] Cited for: FUNCTION. |
| [7] | "Nek9, a novel FACT-associated protein, modulates interphase progression." Tan B.C.-M., Lee S.-C. J. Biol. Chem. 279:9321-9330(2004) [PubMed: 14660563] [Abstract] Cited for: FUNCTION, INTERACTION WITH SSRP1 AND SUPT16H, SUBCELLULAR LOCATION, PHOSPHORYLATION AT THR-210. |
| [8] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed: 17081983] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-869, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [9] | "Proteomics analysis of protein kinases by target class-selective prefractionation and tandem mass spectrometry." Wissing J., Jaensch L., Nimtz M., Dieterich G., Hornberger R., Keri G., Wehland J., Daub H. Mol. Cell. Proteomics 6:537-547(2007) [PubMed: 17192257] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-332; THR-333; THR-358 AND SER-868, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [10] | "The NIMA-family kinase Nek6 phosphorylates the kinesin Eg5 at a novel site necessary for mitotic spindle formation." Rapley J., Nicolas M., Groen A., Regue L., Bertran M.T., Caelles C., Avruch J., Roig J. J. Cell Sci. 121:3912-3921(2008) [PubMed: 19001501] [Abstract] Cited for: INTERACTION WITH NEK6. |
| [11] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed: 18691976] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-2; SER-13; SER-16; SER-20; SER-29; SER-76; THR-254; SER-331; SER-332; SER-741; SER-750; SER-793; SER-827; SER-829; SER-836; SER-868; THR-886; SER-944 AND SER-978, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [12] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-333, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [13] | "Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach." Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S. Anal. Chem. 81:4493-4501(2009) [PubMed: 19413330] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-333, MASS SPECTROMETRY. Tissue: Embryonic kidney. |
| [14] | "An autoinhibitory tyrosine motif in the cell-cycle-regulated Nek7 kinase is released through binding of Nek9." Richards M.W., O'Regan L., Mas-Droux C., Blot J.M., Cheung J., Hoelder S., Fry A.M., Bayliss R. Mol. Cell 36:560-570(2009) [PubMed: 19941817] [Abstract] Cited for: FUNCTION. |
| [15] | "Large-scale proteomics analysis of the human kinome." Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G., Mann M., Daub H. Mol. Cell. Proteomics 8:1751-1764(2009) [PubMed: 19369195] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-2; SER-13; SER-16; SER-20; SER-28; SER-29; TYR-52; SER-76; SER-203; TYR-205; THR-254; SER-331; SER-332; THR-333; THR-335; SER-357; THR-358; SER-413; SER-735; SER-749; SER-750; SER-793; THR-795; SER-801; SER-827; SER-829; SER-832; SER-836; SER-838; SER-868; SER-869; THR-886; SER-944; SER-974 AND SER-978, MASS SPECTROMETRY. |
| [16] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed: 19690332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-333, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [17] | "Lysine acetylation targets protein complexes and co-regulates major cellular functions." Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T., Olsen J.V., Mann M. Science 325:834-840(2009) [PubMed: 19608861] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-731, MASS SPECTROMETRY. |
| [18] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed: 21269460] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [19] | "Patterns of somatic mutation in human cancer genomes." Greenman C., Stephens P., Smith R., Dalgliesh G.L., Hunter C., Bignell G., Davies H., Teague J., Butler A., Stevens C., Edkins S., O'Meara S., Vastrik I., Schmidt E.E., Avis T., Barthorpe S., Bhamra G., Buck G. Stratton M.R.Nature 446:153-158(2007) [PubMed: 17344846] [Abstract] Cited for: VARIANTS [LARGE SCALE ANALYSIS] HIS-429; THR-828 AND SER-870. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AY048580 mRNA. Translation: AAL05428.1. AY080896 mRNA. Translation: AAL87410.1. AB082526 mRNA. Translation: BAC02704.1. Different initiation. AC007055 Genomic DNA. Translation: AAD31936.1. Sequence problems. AC007055 Genomic DNA. Translation: AAD31938.1. AC007055 Genomic DNA. Translation: AAD31939.1. AC007055 Genomic DNA. Translation: AAD31940.1. BC009336 mRNA. Translation: AAH09336.2. BC093881 mRNA. Translation: AAH93881.1. BC112101 mRNA. Translation: AAI12102.1. |
| IPI | IPI00301609. |
| RefSeq | NP_149107.4. NM_033116.4. |
| UniGene | Hs.7200. |
3D structure databases | |
| ProteinModelPortal | Q8TD19. |
| SMR | Q8TD19. Positions 51-312, 329-727. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q8TD19. 16 interactions. |
| MINT | MINT-2984282. |
| STRING | Q8TD19. |
PTM databases | |
| PhosphoSite | Q8TD19. |
Polymorphism databases | |
| DMDM | 116242675. |
Proteomic databases | |
| PeptideAtlas | Q8TD19. |
| PRIDE | Q8TD19. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000238616; ENSP00000238616; ENSG00000119638. |
| GeneID | 91754. |
| KEGG | hsa:91754. |
| UCSC | uc001xrl.1. human. |
Organism-specific databases | |
| CTD | 91754. |
| GeneCards | GC14M075548. |
| H-InvDB | HIX0202044. |
| HGNC | HGNC:18591. NEK9. |
| HPA | HPA001405. |
| MIM | 609798. gene. |
| neXtProt | NX_Q8TD19. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | prNOG13112. |
| GeneTree | ENSGT00600000084101. |
| HOVERGEN | HBG039572. |
| InParanoid | Q8TD19. |
| OMA | SFYKIRT. |
| OrthoDB | EOG4NZTSM. |
| PhylomeDB | Q8TD19. |
Gene expression databases | |
| ArrayExpress | Q8TD19. |
| Bgee | Q8TD19. |
| CleanEx | HS_NEK8. HS_NEK9. |
| Genevestigator | Q8TD19. |
| GermOnline | ENSG00000119638. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR011009. Kinase-like_dom. IPR000719. Prot_kinase_cat_dom. IPR000408. Reg_chr_condens. IPR009091. Reg_csome_cond/b-lactamase_inh. IPR017442. Se/Thr_kinase-like_dom. IPR008271. Ser/Thr_kinase_AS. IPR002290. Ser/Thr_kinase_dom. [Graphical view] |
| Gene3D | G3DSA:2.130.10.30. Reg_csome_cond/b-lactamase_inh. 1 hit. |
| KO | K08857. |
| Pfam | PF00069. Pkinase. 1 hit. PF00415. RCC1. 4 hits. [Graphical view] |
| SMART | SM00220. S_TKc. 1 hit. [Graphical view] |
| SUPFAM | SSF56112. Kinase_like. 1 hit. SSF50985. RCC1/BLIP-II. 1 hit. |
| PROSITE | PS00107. PROTEIN_KINASE_ATP. False negative. PS50011. PROTEIN_KINASE_DOM. 1 hit. PS00108. PROTEIN_KINASE_ST. 1 hit. PS00625. RCC1_1. False negative. PS00626. RCC1_2. False negative. PS50012. RCC1_3. 6 hits. [Graphical view] |
| ProtoNet | Search... |
Other | |
| NextBio | 77443. |
| SOURCE | Search... |
Entry information
| Entry name | NEK9_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q8TD19 Secondary accession number(s): Q52LK6 Q9Y6S6 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human and mouse protein kinases Human and mouse protein kinases: classification and index |
| Human chromosome 14 Human chromosome 14: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with