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Q8TCZ2 (C99L2_HUMAN) Reviewed, UniProtKB/Swiss-Prot

Last modified March 19, 2014. Version 92. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
CD99 antigen-like protein 2
Alternative name(s):
MIC2-like protein 1
CD_antigen=CD99
Gene names
Name:CD99L2
Synonyms:MIC2L1
ORF Names:UNQ1964/PRO4486
OrganismHomo sapiens (Human) [Reference proteome]
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length262 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Plays a role in a late step of leukocyte extravasation helping cells to overcome the endothelial basement membrane. Acts at the same site as, but independently of, PECAM1 By similarity. Homophilic adhesion molecule, but these interactions may not be required for cell aggregation By similarity.

Subcellular location

Cell membrane; Single-pass type I membrane protein; Extracellular side By similarity. Cell junction By similarity.

Tissue specificity

Expressed in many tissues, with low expression in thymus. Ref.1

Post-translational modification

O-glycosylated By similarity.

Sequence similarities

Belongs to the CD99 family.

Sequence caution

The sequence CAB66515.1 differs from that shown. Reason: Frameshift at position 156.

Ontologies

Keywords
   Biological processCell adhesion
   Cellular componentCell junction
Cell membrane
Membrane
   Coding sequence diversityAlternative splicing
   DomainSignal
Transmembrane
Transmembrane helix
   PTMGlycoprotein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processcell adhesion

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentcell junction

Inferred from electronic annotation. Source: UniProtKB-SubCell

integral component of membrane

Inferred from electronic annotation. Source: UniProtKB-KW

plasma membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Alternative products

This entry describes 6 isoforms produced by alternative splicing. [Align] [Select]
Isoform 1 (identifier: Q8TCZ2-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 2 (identifier: Q8TCZ2-2)

The sequence of this isoform differs from the canonical sequence as follows:
     45-93: Missing.
Isoform 3 (identifier: Q8TCZ2-3)

The sequence of this isoform differs from the canonical sequence as follows:
     44-44: Q → R
     45-116: Missing.
Isoform 4 (identifier: Q8TCZ2-4)

The sequence of this isoform differs from the canonical sequence as follows:
     44-145: QPWDHTTTTT...RKPIAGGGGF → PALGMYHKLD...GFKAHLDNPG
     146-262: Missing.
Note: No experimental confirmation available.
Isoform 5 (identifier: Q8TCZ2-5)

The sequence of this isoform differs from the canonical sequence as follows:
     68-68: G → GPTEG
     218-219: QQ → QHAAAGQE
Note: No experimental confirmation available.
Isoform 6 (identifier: Q8TCZ2-6)

The sequence of this isoform differs from the canonical sequence as follows:
     93-165: Missing.
Note: No experimental confirmation available.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2525 Potential
Chain26 – 262237CD99 antigen-like protein 2
PRO_0000340092

Regions

Topological domain26 – 185160Extracellular Potential
Transmembrane186 – 20621Helical; Potential
Topological domain207 – 26256Cytoplasmic Potential
Compositional bias49 – 546Poly-Thr
Compositional bias99 – 1024Poly-Thr
Compositional bias141 – 1444Poly-Gly
Compositional bias253 – 2597Poly-Pro

Natural variations

Alternative sequence44 – 145102QPWDH…GGGGF → PALGMYHKLDGLKQQNFILS LFWMLEVLYQGVGWATFSLK ALGKNLSLTFPTSGGSRCSL VCGCITPISASVVTWCSPFC VSLLSLTKMLVSGFKAHLDN PG in isoform 4.
VSP_034181
Alternative sequence441Q → R in isoform 3.
VSP_034182
Alternative sequence45 – 11672Missing in isoform 3.
VSP_034183
Alternative sequence45 – 9349Missing in isoform 2.
VSP_034184
Alternative sequence681G → GPTEG in isoform 5.
VSP_041815
Alternative sequence93 – 16573Missing in isoform 6.
VSP_044663
Alternative sequence146 – 262117Missing in isoform 4.
VSP_034185
Alternative sequence218 – 2192QQ → QHAAAGQE in isoform 5.
VSP_041816

Experimental info

Sequence conflict1091R → I in BAF82889. Ref.4
Sequence conflict1281R → Q in BAG54124. Ref.4
Sequence conflict1701Y → H in BAF82889. Ref.4
Sequence conflict1761P → R in BAF84064. Ref.4
Sequence conflict2291E → G in BAG56778. Ref.4

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 [UniParc].

Last modified June 1, 2002. Version 1.
Checksum: 3A254961DD32C191

FASTA26227,986
        10         20         30         40         50         60 
MVAWRSAFLV CLAFSLATLV QRGSGDFDDF NLEDAVKETS SVKQPWDHTT TTTTNRPGTT 

        70         80         90        100        110        120 
RAPAKPPGSG LDLADALDDQ DDGRRKPGIG GRERWNHVTT TTKRPVTTRA PANTLGNDFD 

       130        140        150        160        170        180 
LADALDDRND RDDGRRKPIA GGGGFSDKDL EDIVGGGEYK PDKGKGDGRY GSNDDPGSGM 

       190        200        210        220        230        240 
VAEPGTIAGV ASALAMALIG AVSSYISYQQ KKFCFSIQQG LNADYVKGEN LEAVVCEEPQ 

       250        260 
VKYSTLHTQS AEPPPPPEPA RI 

« Hide

Isoform 2 [UniParc].

Checksum: F90595DAA99BA7D5
Show »

FASTA21322,833
Isoform 3 [UniParc].

Checksum: F21A43C7F6B319F6
Show »

FASTA19020,300
Isoform 4 [UniParc].

Checksum: 777A148801613231
Show »

FASTA14515,708
Isoform 5 [UniParc].

Checksum: 6A92D41FDA0C5FD4
Show »

FASTA27228,907
Isoform 6 [UniParc].

Checksum: 9F21AFB2BA02904B
Show »

FASTA18920,032

References

« Hide 'large scale' references
[1]"Cloning, genomic organization, alternative transcripts and expression analysis of CD99L2, a novel paralog of human CD99, and identification of evolutionary conserved motifs."
Suh Y.H., Shin Y.K., Kook M.-C., Oh K.I., Park W.S., Kim S.H., Lee I.-S., Park H.J., Huh T.-L., Park S.H.
Gene 307:63-76(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1; 2 AND 3), ALTERNATIVE SPLICING, TISSUE SPECIFICITY.
Tissue: Skeletal muscle and Thymocyte.
[2]"Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs."
Wiemann S., Weil B., Wellenreuther R., Gassenhuber J., Glassl S., Ansorge W., Boecher M., Bloecker H., Bauersachs S., Blum H., Lauber J., Duesterhoeft A., Beyer A., Koehrer K., Strack N., Mewes H.-W., Ottenwaelder B., Obermaier B. expand/collapse author list , Tampe J., Heubner D., Wambutt R., Korn B., Klein M., Poustka A.
Genome Res. 11:422-435(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
Tissue: Amygdala.
[3]"The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment."
Clark H.F., Gurney A.L., Abaya E., Baker K., Baldwin D.T., Brush J., Chen J., Chow B., Chui C., Crowley C., Currell B., Deuel B., Dowd P., Eaton D., Foster J.S., Grimaldi C., Gu Q., Hass P.E. expand/collapse author list , Heldens S., Huang A., Kim H.S., Klimowski L., Jin Y., Johnson S., Lee J., Lewis L., Liao D., Mark M.R., Robbie E., Sanchez C., Schoenfeld J., Seshagiri S., Simmons L., Singh J., Smith V., Stinson J., Vagts A., Vandlen R.L., Watanabe C., Wieand D., Woods K., Xie M.-H., Yansura D.G., Yi S., Yu G., Yuan J., Zhang M., Zhang Z., Goddard A.D., Wood W.I., Godowski P.J., Gray A.M.
Genome Res. 13:2265-2270(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
[4]"Complete sequencing and characterization of 21,243 full-length human cDNAs."
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. expand/collapse author list , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1; 2; 5 AND 6).
Tissue: Brain and Thalamus.
[5]"The DNA sequence of the human X chromosome."
Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D., Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A., Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G., Jones M.C. expand/collapse author list , Hurles M.E., Andrews T.D., Scott C.E., Searle S., Ramser J., Whittaker A., Deadman R., Carter N.P., Hunt S.E., Chen R., Cree A., Gunaratne P., Havlak P., Hodgson A., Metzker M.L., Richards S., Scott G., Steffen D., Sodergren E., Wheeler D.A., Worley K.C., Ainscough R., Ambrose K.D., Ansari-Lari M.A., Aradhya S., Ashwell R.I., Babbage A.K., Bagguley C.L., Ballabio A., Banerjee R., Barker G.E., Barlow K.F., Barrett I.P., Bates K.N., Beare D.M., Beasley H., Beasley O., Beck A., Bethel G., Blechschmidt K., Brady N., Bray-Allen S., Bridgeman A.M., Brown A.J., Brown M.J., Bonnin D., Bruford E.A., Buhay C., Burch P., Burford D., Burgess J., Burrill W., Burton J., Bye J.M., Carder C., Carrel L., Chako J., Chapman J.C., Chavez D., Chen E., Chen G., Chen Y., Chen Z., Chinault C., Ciccodicola A., Clark S.Y., Clarke G., Clee C.M., Clegg S., Clerc-Blankenburg K., Clifford K., Cobley V., Cole C.G., Conquer J.S., Corby N., Connor R.E., David R., Davies J., Davis C., Davis J., Delgado O., Deshazo D., Dhami P., Ding Y., Dinh H., Dodsworth S., Draper H., Dugan-Rocha S., Dunham A., Dunn M., Durbin K.J., Dutta I., Eades T., Ellwood M., Emery-Cohen A., Errington H., Evans K.L., Faulkner L., Francis F., Frankland J., Fraser A.E., Galgoczy P., Gilbert J., Gill R., Gloeckner G., Gregory S.G., Gribble S., Griffiths C., Grocock R., Gu Y., Gwilliam R., Hamilton C., Hart E.A., Hawes A., Heath P.D., Heitmann K., Hennig S., Hernandez J., Hinzmann B., Ho S., Hoffs M., Howden P.J., Huckle E.J., Hume J., Hunt P.J., Hunt A.R., Isherwood J., Jacob L., Johnson D., Jones S., de Jong P.J., Joseph S.S., Keenan S., Kelly S., Kershaw J.K., Khan Z., Kioschis P., Klages S., Knights A.J., Kosiura A., Kovar-Smith C., Laird G.K., Langford C., Lawlor S., Leversha M., Lewis L., Liu W., Lloyd C., Lloyd D.M., Loulseged H., Loveland J.E., Lovell J.D., Lozado R., Lu J., Lyne R., Ma J., Maheshwari M., Matthews L.H., McDowall J., McLaren S., McMurray A., Meidl P., Meitinger T., Milne S., Miner G., Mistry S.L., Morgan M., Morris S., Mueller I., Mullikin J.C., Nguyen N., Nordsiek G., Nyakatura G., O'dell C.N., Okwuonu G., Palmer S., Pandian R., Parker D., Parrish J., Pasternak S., Patel D., Pearce A.V., Pearson D.M., Pelan S.E., Perez L., Porter K.M., Ramsey Y., Reichwald K., Rhodes S., Ridler K.A., Schlessinger D., Schueler M.G., Sehra H.K., Shaw-Smith C., Shen H., Sheridan E.M., Shownkeen R., Skuce C.D., Smith M.L., Sotheran E.C., Steingruber H.E., Steward C.A., Storey R., Swann R.M., Swarbreck D., Tabor P.E., Taudien S., Taylor T., Teague B., Thomas K., Thorpe A., Timms K., Tracey A., Trevanion S., Tromans A.C., d'Urso M., Verduzco D., Villasana D., Waldron L., Wall M., Wang Q., Warren J., Warry G.L., Wei X., West A., Whitehead S.L., Whiteley M.N., Wilkinson J.E., Willey D.L., Williams G., Williams L., Williamson A., Williamson H., Wilming L., Woodmansey R.L., Wray P.W., Yen J., Zhang J., Zhou J., Zoghbi H., Zorilla S., Buck D., Reinhardt R., Poustka A., Rosenthal A., Lehrach H., Meindl A., Minx P.J., Hillier L.W., Willard H.F., Wilson R.K., Waterston R.H., Rice C.M., Vaudin M., Coulson A., Nelson D.L., Weinstock G., Sulston J.E., Durbin R.M., Hubbard T., Gibbs R.A., Beck S., Rogers J., Bentley D.R.
Nature 434:325-337(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[6]Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. expand/collapse author list , Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W., Venter J.C.
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[7]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 4).
Tissue: Brain and Lung.
[8]"Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis."
Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M.
Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
Tissue: Cervix carcinoma.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY078165 mRNA. Translation: AAL86617.1.
AY078166 mRNA. Translation: AAL86618.1.
AY078167 mRNA. Translation: AAL86619.1.
AL136580 mRNA. Translation: CAB66515.1. Frameshift.
AY358837 mRNA. Translation: AAQ89196.1.
AK290200 mRNA. Translation: BAF82889.1.
AK291375 mRNA. Translation: BAF84064.1.
AK293244 mRNA. Translation: BAG56778.1.
AK125020 mRNA. Translation: BAG54124.1.
AF002223 Genomic DNA. No translation available.
AF274573 Genomic DNA. No translation available.
CH471169 Genomic DNA. Translation: EAW99391.1.
CH471169 Genomic DNA. Translation: EAW99392.1.
CH471169 Genomic DNA. Translation: EAW99393.1.
CH471169 Genomic DNA. Translation: EAW99395.1.
BC025729 mRNA. Translation: AAH25729.1.
BC030536 mRNA. Translation: AAH30536.1.
RefSeqNP_001171737.1. NM_001184808.1.
NP_001229543.1. NM_001242614.1.
NP_113650.2. NM_031462.3.
NP_604394.1. NM_134445.3.
NP_604395.1. NM_134446.3.
UniGeneHs.522805.

3D structure databases

ProteinModelPortalQ8TCZ2.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid123726. 2 interactions.
IntActQ8TCZ2. 1 interaction.
MINTMINT-4724363.
STRING9606.ENSP00000359403.

PTM databases

PhosphoSiteQ8TCZ2.

Polymorphism databases

DMDM74730601.

Proteomic databases

PaxDbQ8TCZ2.
PRIDEQ8TCZ2.

Protocols and materials databases

DNASU83692.
StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENST00000320893; ENSP00000325449; ENSG00000102181. [Q8TCZ2-4]
ENST00000355149; ENSP00000347275; ENSG00000102181. [Q8TCZ2-3]
ENST00000370377; ENSP00000359403; ENSG00000102181. [Q8TCZ2-1]
ENST00000437787; ENSP00000394858; ENSG00000102181. [Q8TCZ2-6]
ENST00000466436; ENSP00000417697; ENSG00000102181. [Q8TCZ2-2]
ENST00000596292; ENSP00000469207; ENSG00000269478. [Q8TCZ2-4]
ENST00000596721; ENSP00000470640; ENSG00000269478. [Q8TCZ2-2]
ENST00000597984; ENSP00000473060; ENSG00000269478. [Q8TCZ2-1]
ENST00000600347; ENSP00000468852; ENSG00000269478. [Q8TCZ2-6]
ENST00000601765; ENSP00000471532; ENSG00000269478. [Q8TCZ2-3]
GeneID83692.
KEGGhsa:83692.
UCSCuc004fek.3. human. [Q8TCZ2-5]
uc004fel.3. human. [Q8TCZ2-1]
uc004fem.3. human. [Q8TCZ2-2]
uc004fen.3. human. [Q8TCZ2-3]

Organism-specific databases

CTD83692.
GeneCardsGC0XM149934.
HGNCHGNC:18237. CD99L2.
HPAHPA038782.
HPA038783.
MIM300846. gene.
neXtProtNX_Q8TCZ2.
PharmGKBPA30805.
GenAtlasSearch...

Phylogenomic databases

eggNOGNOG42091.
HOVERGENHBG067989.
InParanoidQ8TCZ2.
OMAKYSTLHT.
PhylomeDBQ8TCZ2.
TreeFamTF332323.

Gene expression databases

ArrayExpressQ8TCZ2.
BgeeQ8TCZ2.
CleanExHS_CD99L2.
GenevestigatorQ8TCZ2.

Family and domain databases

InterProIPR022078. CD99L2.
[Graphical view]
PfamPF12301. CD99L2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

ChiTaRSCD99L2. human.
GeneWikiCD99L2.
GenomeRNAi83692.
NextBio72651.
PROQ8TCZ2.
SOURCESearch...

Entry information

Entry nameC99L2_HUMAN
AccessionPrimary (citable) accession number: Q8TCZ2
Secondary accession number(s): A8K2D5 expand/collapse secondary AC list , A8K5R0, B3KWG2, B4DDL7, E7EMK5, E9PD27, Q8TAW2, Q8TCZ0, Q8TCZ1, Q9BQG9
Entry history
Integrated into UniProtKB/Swiss-Prot: June 10, 2008
Last sequence update: June 1, 2002
Last modified: March 19, 2014
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Relevant documents

SIMILARITY comments

Index of protein domains and families

MIM cross-references

Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

Human chromosome X

Human chromosome X: entries, gene names and cross-references to MIM