Q8TCT7 (SPP2B_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 29, 2013.
Version 107.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Signal peptide peptidase-like 2B Short name=SPP-like 2B Short name=SPPL2b EC=3.4.23.- Alternative name(s): Intramembrane protease 4 Short name=IMP-4 Presenilin homologous protein 4 Short name=PSH4 Presenilin-like protein 1 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 592 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Intramembrane-cleaving aspartic protease (I-CLiP) that cleaves type II membrane signal peptides in the hydrophobic plane of the membrane. Functions in ITM2B and TNF processing. Catalyzes the intramembrane cleavage of the anchored fragment of shed TNF-alpha (TNF), which promotes the release of the intracellular domain (ICD) for signaling to the nucleus. May play a role in the regulation of innate and adaptive immunity. Ref.12 Ref.13 Ref.14 Ref.15 Ref.16 |
| Subunit structure | Monomer. Homodimer. Interacts with ITM2B and TNF. Ref.11 Ref.13 Ref.14 |
| Subcellular location | Golgi apparatus membrane; Multi-pass membrane protein. Note: targeted through the entire secretory pathway to endosomes/lysosomes. Ref.10 Ref.14 |
| Tissue specificity | Expressed predominantly in adrenal cortex and mammary gland. Ref.9 |
| Domain | The PAL motif is required for normal active site conformation By similarity. The catalytic domains embedded in the membrane are in the opposite orientation to that of the presenilin protein family; therefore, it is predicted to cleave type II-oriented substrate peptides like the prototypic protease SPP. |
| Post-translational modification | |
| Sequence similarities | Belongs to the peptidase A22B family. Contains 1 PA (protease associated) domain. |
| Sequence caution | The sequence AAC05601.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence AAG45441.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. The sequence BAA96056.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. |
Ontologies
Alternative products
| This entry describes 4 isoforms produced by alternative splicing. [Align] [Select] Note: Experimental confirmation may be lacking for some isoforms. | ||||||
| Isoform 1 (identifier: Q8TCT7-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q8TCT7-2) The sequence of this isoform differs from the canonical sequence as follows: 320-592: Missing. | ||||||
| Isoform 3 (identifier: Q8TCT7-3) The sequence of this isoform differs from the canonical sequence as follows: 280-291: Missing. 320-592: Missing. | ||||||
| Isoform 4 (identifier: Q8TCT7-4) The sequence of this isoform differs from the canonical sequence as follows: 506-511: KVLPPS → VNTSLL 512-592: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 25 | 25 | Potential | ||||||
| Chain | 26 – 592 | 567 | Signal peptide peptidase-like 2B | PRO_0000073909 | |||||
Regions | |||||||||
| Topological domain | 26 – 174 | 149 | Lumenal Potential | ||||||
| Transmembrane | 175 – 195 | 21 | Helical; Potential | ||||||
| Topological domain | 196 – 221 | 26 | Cytoplasmic Potential | ||||||
| Transmembrane | 222 – 244 | 23 | Helical; Potential | ||||||
| Topological domain | 245 – 248 | 4 | Lumenal Potential | ||||||
| Transmembrane | 249 – 271 | 23 | Helical; Potential | ||||||
| Topological domain | 272 – 293 | 22 | Cytoplasmic Potential | ||||||
| Transmembrane | 294 – 314 | 21 | Helical; Potential | ||||||
| Topological domain | 315 – 319 | 5 | Lumenal Potential | ||||||
| Transmembrane | 320 – 340 | 21 | Helical; Potential | ||||||
| Topological domain | 341 – 348 | 8 | Cytoplasmic Potential | ||||||
| Transmembrane | 349 – 369 | 21 | Helical; Potential | ||||||
| Topological domain | 370 – 412 | 43 | Lumenal Potential | ||||||
| Transmembrane | 413 – 433 | 21 | Helical; Potential | ||||||
| Topological domain | 434 – 445 | 12 | Cytoplasmic Potential | ||||||
| Transmembrane | 446 – 466 | 21 | Helical; Potential | ||||||
| Topological domain | 467 – 470 | 4 | Lumenal Potential | ||||||
| Transmembrane | 471 – 491 | 21 | Helical; Potential | ||||||
| Topological domain | 492 – 592 | 101 | Cytoplasmic Potential | ||||||
| Domain | 71 – 149 | 79 | PA | ||||||
| Motif | 472 – 474 | 3 | PAL | ||||||
| Compositional bias | 350 – 357 | 8 | Poly-Leu | ||||||
| Compositional bias | 509 – 551 | 43 | Pro-rich | ||||||
Sites | |||||||||
| Active site | 359 | 1 | By similarity | ||||||
| Active site | 421 | 1 | By similarity | ||||||
Amino acid modifications | |||||||||
| Glycosylation | 97 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 129 | 1 | N-linked (GlcNAc...) Potential | ||||||
Natural variations | |||||||||
| Alternative sequence | 280 – 291 | 12 | Missing in isoform 3. | VSP_005203 | |||||
| Alternative sequence | 320 – 592 | 273 | Missing in isoform 2 and isoform 3. | VSP_005204 | |||||
| Alternative sequence | 506 – 511 | 6 | KVLPPS → VNTSLL in isoform 4. | VSP_009221 | |||||
| Alternative sequence | 512 – 592 | 81 | Missing in isoform 4. | VSP_009222 | |||||
| Natural variant | 574 | 1 | S → P. Corresponds to variant rs10402284 [ dbSNP | Ensembl ]. | VAR_059780 | |||||
Experimental info | |||||||||
| Mutagenesis | 421 | 1 | D → A: Loss of intramembrane-cleaving activity toward ITM2B and TNF. Ref.13 Ref.14 Ref.15 Ref.16 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Characterization of a new protein family with homology to presenilins." Irmler M., Tomiuk S., Korner M.R., Hofmann K., Conradt M. Submitted (SEP-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). |
| [2] | Martoglio B. Submitted (NOV-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). |
| [3] | "Novel class of polytopic proteins with domains associated with putative protease activity." Grigorenko A.P., Moliaka Y.K., Korovaitseva G.I., Rogaev E.I. Biokhimiia 67:826-834(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). Tissue: Blood. |
| [4] | "Prediction of the coding sequences of unidentified human genes. XVII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro." Nagase T., Kikuno R., Ishikawa K., Hirosawa M., Ohara O. DNA Res. 7:143-150(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Brain. |
| [5] | "The DNA sequence and biology of human chromosome 19." Grimwood J., Gordon L.A., Olsen A.S., Terry A., Schmutz J., Lamerdin J.E., Hellsten U., Goodstein D., Couronne O., Tran-Gyamfi M., Aerts A., Altherr M., Ashworth L., Bajorek E., Black S., Branscomb E., Caenepeel S., Carrano A.V. Lucas S.M.Nature 428:529-535(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1; 2 AND 4). Tissue: Brain, Eye and Testis. |
| [8] | The European IMAGE consortium Submitted (JUL-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 201-318 (ISOFORM 3). |
| [9] | "Consensus analysis of signal peptide peptidase and homologous human aspartic proteases reveals opposite topology of catalytic domains compared with presenilins." Friedmann E., Lemberg M.K., Weihofen A., Dev K.K., Dengler U., Rovelli G., Martoglio B. J. Biol. Chem. 279:50790-50798(2004) [PubMed] [Europe PMC] [Abstract] Cited for: GLYCOSYLATION, TOPOLOGY, TISSUE SPECIFICITY. |
| [10] | "Differential localization and identification of a critical aspartate suggest non-redundant proteolytic functions of the presenilin homologues SPPL2b and SPPL3." Krawitz P., Haffner C., Fluhrer R., Steiner H., Schmid B., Haass C. J. Biol. Chem. 280:39515-39523(2005) [PubMed] [Europe PMC] [Abstract] Cited for: GLYCOSYLATION, SUBCELLULAR LOCATION. |
| [11] | "Intramembrane proteolytic cleavage by human signal peptide peptidase like 3 and malaria signal peptide peptidase." Nyborg A.C., Ladd T.B., Jansen K., Kukar T., Golde T.E. FASEB J. 20:1671-1679(2006) [PubMed] [Europe PMC] [Abstract] Cited for: HOMODIMERIZATION. |
| [12] | "SPPL2a and SPPL2b promote intramembrane proteolysis of TNFalpha in activated dendritic cells to trigger IL-12 production." Friedmann E., Hauben E., Maylandt K., Schleeger S., Vreugde S., Lichtenthaler S.F., Kuhn P.H., Stauffer D., Rovelli G., Martoglio B. Nat. Cell Biol. 8:843-848(2006) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION IN CLEAVAGE OF TNF. |
| [13] | "A gamma-secretase-like intramembrane cleavage of TNFalpha by the GxGD aspartyl protease SPPL2b." Fluhrer R., Grammer G., Israel L., Condron M.M., Haffner C., Friedmann E., Bohland C., Imhof A., Martoglio B., Teplow D.B., Haass C. Nat. Cell Biol. 8:894-896(2006) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION IN CLEAVAGE OF TNF, INTERACTION WITH TNF, MUTAGENESIS OF ASP-421. |
| [14] | "Regulated intramembrane proteolysis of Bri2 (Itm2b) by ADAM10 and SPPL2a/SPPL2b." Martin L., Fluhrer R., Reiss K., Kremmer E., Saftig P., Haass C. J. Biol. Chem. 283:1644-1652(2008) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION IN CLEAVAGE OF ITM2B, SUBCELLULAR LOCATION, INTERACTION WITH ITM2B, MUTAGENESIS OF ASP-421. |
| [15] | "Substrate requirements for SPPL2b-dependent regulated intramembrane proteolysis." Martin L., Fluhrer R., Haass C. J. Biol. Chem. 284:5662-5670(2009) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION IN CLEAVAGE OF ITM2B, MUTAGENESIS OF ASP-421. |
| [16] | "The alpha-helical content of the transmembrane domain of the British dementia protein-2 (Bri2) determines its processing by signal peptide peptidase-like 2b (SPPL2b)." Fluhrer R., Martin L., Klier B., Haug-Kroper M., Grammer G., Nuscher B., Haass C. J. Biol. Chem. 287:5156-5163(2012) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION IN CLEAVAGE OF ITM2B, MUTAGENESIS OF ASP-421. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AJ345027 mRNA. Translation: CAC87788.1. AJ420897 mRNA. Translation: CAD13134.1. AY169315 mRNA. Translation: AAO12540.1. AB040965 mRNA. Translation: BAA96056.1. Different initiation. AC004410 Genomic DNA. Translation: AAC05601.1. Sequence problems. AC005258 Genomic DNA. Translation: AAG45441.1. Different initiation. CH471139 Genomic DNA. Translation: EAW69383.1. CH471139 Genomic DNA. Translation: EAW69388.1. BC001788 mRNA. Translation: AAH01788.2. BC028391 mRNA. Translation: AAH28391.2. BC093046 mRNA. Translation: AAH93046.1. AL365405 mRNA. Translation: CAB96951.1. Sequence problems. |
| IPI | IPI00220530. IPI00304345. IPI00386494. IPI00398574. |
| RefSeq | NP_001070706.1. NM_001077238.1. NP_694533.1. NM_152988.2. |
| UniGene | Hs.744026. |
3D structure databases | |
| ProteinModelPortal | Q8TCT7. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q8TCT7. 1 interaction. |
Protein family/group databases | |
| MEROPS | A22.004. |
PTM databases | |
| PhosphoSite | Q8TCT7. |
Polymorphism databases | |
| DMDM | 97537015. |
Proteomic databases | |
| PaxDb | Q8TCT7. |
| PRIDE | Q8TCT7. |
Protocols and materials databases | |
| DNASU | 56928. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| GeneID | 56928. |
| KEGG | hsa:56928. |
| UCSC | uc002lvr.3. human. uc002lvs.3. human. |
Organism-specific databases | |
| CTD | 56928. |
| GeneCards | GC19P002328. |
| H-InvDB | HIX0158528. |
| HGNC | HGNC:30627. SPPL2B. |
| MIM | 608239. gene. |
| neXtProt | NX_Q8TCT7. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG250196. |
| HOVERGEN | HBG024193. |
| InParanoid | Q8TCT7. |
| KO | K09597. |
| OrthoDB | EOG4Q2DF6. |
Gene expression databases | |
| Genevestigator | Q8TCT7. |
| GermOnline | ENSG00000005206. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR006639. Peptidase_A22. IPR007369. Peptidase_A22B_SPP. IPR003137. Protease-assoc_domain. [Graphical view] |
| PANTHER | PTHR12174. PTHR12174. 1 hit. |
| Pfam | PF02225. PA. 1 hit. PF04258. Peptidase_A22B. 1 hit. [Graphical view] |
| SMART | SM00730. PSN. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | SPPL2B. human. |
| GenomeRNAi | 56928. |
| NextBio | 62462. |
| SOURCE | Search... |
Entry information
| Entry name | SPP2B_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q8TCT7 Secondary accession number(s): D6W609 Q9P1Z6 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Peptidase families Classification of peptidase families and list of entries |
| Human chromosome 19 Human chromosome 19: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
