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Protein

Protein FAM71B

Gene

FAM71B

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

May be involved in RNA biogenesis.1 Publication

Names & Taxonomyi

Protein namesi
Recommended name:
Protein FAM71B
Gene namesi
Name:FAM71B
ORF Names:HSD-51, HSD51
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 5

Organism-specific databases

HGNCiHGNC:28397. FAM71B.

Subcellular locationi

Nucleus 1 Publication
Note: Cajal body and speckle localization.

GO - Cellular componenti

  1. nucleus Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA142671832.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 605605Protein FAM71BPRO_0000285643Add
BLAST

Proteomic databases

PaxDbiQ8TC56.
PRIDEiQ8TC56.

PTM databases

PhosphoSiteiQ8TC56.

Expressioni

Gene expression databases

BgeeiQ8TC56.
CleanExiHS_FAM71B.
GenevestigatoriQ8TC56.

Organism-specific databases

HPAiHPA039478.
HPA040771.

Interactioni

Subunit structurei

Interacts with FRG1.1 Publication

Protein-protein interaction databases

STRINGi9606.ENSP00000305596.

Structurei

3D structure databases

ProteinModelPortaliQ8TC56.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi441 – 45818Bipartite nuclear localization signalSequence AnalysisAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi225 – 31793Ala-richAdd
BLAST

Sequence similaritiesi

Belongs to the FAM71 family.Curated

Phylogenomic databases

eggNOGiNOG28184.
GeneTreeiENSGT00530000063078.
HOGENOMiHOG000290696.
HOVERGENiHBG058004.
InParanoidiQ8TC56.
OMAiVFNTSMG.
OrthoDBiEOG71ZP2J.
PhylomeDBiQ8TC56.
TreeFamiTF336050.

Family and domain databases

InterProiIPR022168. DUF3699.
[Graphical view]
PfamiPF12480. DUF3699. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8TC56-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSNESCLPYY TAHSYSSMSA FKTSMGDLQR QLYNRGEYNI FKYAPMFESN
60 70 80 90 100
FIQINKKGEV IDVHNRVRMV TVGIVCTSPI LPLPDVMVLA QPTKICEQHV
110 120 130 140 150
RWGRFAKGRG RRPVKTLELT RLLPLKFVKI SIHDHEKQQL RLKLATGRTF
160 170 180 190 200
YLQLCPSSDT REDLFCYWEK LVYLLRPPVE SYCSTPTLLS GDAPPEDNKS
210 220 230 240 250
LVAAELHREG DQSETGLYKP CDVSAATSSA YAGGEGIQHA SHGTASAASP
260 270 280 290 300
STSTPGAAEG GAARTAGGMA VAGTATGPRT DVAIAGAAMS PATGAMSIAT
310 320 330 340 350
TKSAGPGQVT TALAGAAIKN PGENESSKSM AGAANISSEG ISLALVGAAS
360 370 380 390 400
TSLEGTSTSM AGAASLSQDS SLSAAFAGSI TTSKCAAERT EGPAVGPLIS
410 420 430 440 450
TLQSEGYMSE RDGSQKVSQP SAEVWNENKE RREKKDRHPS RKSSHHRKAG
460 470 480 490 500
ESHRRRAGDK NQKASSHRSA SGHKNTRDDK KEKGYSNVRG KRHGSSRKSS
510 520 530 540 550
THSSTKKESR TTQELGKNQS ASSTGALQKK ASKISSFLRS LRATPGSKTR
560 570 580 590 600
VTSHDREVDI VAKMVEKQNI EAKVEKAQGG QELEMISGTM TSEKTEMIVF

ETKSI
Length:605
Mass (Da):64,756
Last modified:May 1, 2007 - v2
Checksum:i84BF94215309E38A
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti280 – 2801T → A in AAY41236. 1 PublicationCurated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti543 – 5431A → V.1 Publication
Corresponds to variant rs17852327 [ dbSNP | Ensembl ].
VAR_032036
Natural varianti564 – 5641M → T.2 Publications
Corresponds to variant rs31208 [ dbSNP | Ensembl ].
VAR_032037
Natural varianti599 – 5991V → I.
Corresponds to variant rs2115480 [ dbSNP | Ensembl ].
VAR_032038

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK057543 mRNA. Translation: BAB71526.1.
AY973323 mRNA. Translation: AAY41236.1.
BC022035 mRNA. Translation: AAH22035.1.
BC025397 mRNA. Translation: AAH25397.1.
BC025409 mRNA. Translation: AAH25409.1.
BC025998 mRNA. Translation: AAH25998.1.
CCDSiCCDS4335.1.
RefSeqiNP_570969.2. NM_130899.2.
UniGeneiHs.666099.

Genome annotation databases

EnsembliENST00000302938; ENSP00000305596; ENSG00000170613.
GeneIDi153745.
KEGGihsa:153745.
UCSCiuc003lwn.3. human.

Polymorphism databases

DMDMi146286168.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK057543 mRNA. Translation: BAB71526.1.
AY973323 mRNA. Translation: AAY41236.1.
BC022035 mRNA. Translation: AAH22035.1.
BC025397 mRNA. Translation: AAH25397.1.
BC025409 mRNA. Translation: AAH25409.1.
BC025998 mRNA. Translation: AAH25998.1.
CCDSiCCDS4335.1.
RefSeqiNP_570969.2. NM_130899.2.
UniGeneiHs.666099.

3D structure databases

ProteinModelPortaliQ8TC56.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000305596.

PTM databases

PhosphoSiteiQ8TC56.

Polymorphism databases

DMDMi146286168.

Proteomic databases

PaxDbiQ8TC56.
PRIDEiQ8TC56.

Protocols and materials databases

DNASUi153745.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000302938; ENSP00000305596; ENSG00000170613.
GeneIDi153745.
KEGGihsa:153745.
UCSCiuc003lwn.3. human.

Organism-specific databases

CTDi153745.
GeneCardsiGC05M156589.
H-InvDBHIX0005354.
HGNCiHGNC:28397. FAM71B.
HPAiHPA039478.
HPA040771.
neXtProtiNX_Q8TC56.
PharmGKBiPA142671832.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG28184.
GeneTreeiENSGT00530000063078.
HOGENOMiHOG000290696.
HOVERGENiHBG058004.
InParanoidiQ8TC56.
OMAiVFNTSMG.
OrthoDBiEOG71ZP2J.
PhylomeDBiQ8TC56.
TreeFamiTF336050.

Miscellaneous databases

GenomeRNAii153745.
NextBioi87175.
PROiQ8TC56.

Gene expression databases

BgeeiQ8TC56.
CleanExiHS_FAM71B.
GenevestigatoriQ8TC56.

Family and domain databases

InterProiIPR022168. DUF3699.
[Graphical view]
PfamiPF12480. DUF3699. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT THR-564.
    Tissue: Testis.
  2. "A new spermatogenesis-related gene."
    Wang Y., Miao S.Y., Zhang X.D., Qiao Y., Liang G., Wang L.F.
    Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Testis.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANTS VAL-543 AND THR-564.
    Tissue: Testis.
  4. Cited for: FUNCTION, SUBCELLULAR LOCATION, INTERACTION WITH FRG1.

Entry informationi

Entry nameiFA71B_HUMAN
AccessioniPrimary (citable) accession number: Q8TC56
Secondary accession number(s): Q1EDD9, Q8TC64, Q96LY8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 1, 2007
Last sequence update: May 1, 2007
Last modified: January 7, 2015
This is version 76 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 5
    Human chromosome 5: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.