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Protein

Zinc finger protein 596

Gene

ZNF596

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

May be involved in transcriptional regulation.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri195 – 21723C2H2-type 1PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri223 – 24523C2H2-type 2PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri251 – 27323C2H2-type 3PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri279 – 30123C2H2-type 4PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri307 – 32923C2H2-type 5PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri335 – 35723C2H2-type 6PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri363 – 38523C2H2-type 7PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri391 – 41323C2H2-type 8PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri419 – 44123C2H2-type 9PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri447 – 46923C2H2-type 10PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri475 – 49723C2H2-type 11PROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: UniProtKB-KW
  2. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Enzyme and pathway databases

ReactomeiREACT_12627. Generic Transcription Pathway.

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger protein 596
Gene namesi
Name:ZNF596
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Chromosome 8

Organism-specific databases

HGNCiHGNC:27268. ZNF596.

Subcellular locationi

  1. Nucleus Curated

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA134901402.

Polymorphism and mutation databases

BioMutaiZNF596.
DMDMi257050982.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 504504Zinc finger protein 596PRO_0000245849Add
BLAST

Proteomic databases

PaxDbiQ8TC21.
PRIDEiQ8TC21.

PTM databases

PhosphoSiteiQ8TC21.

Expressioni

Gene expression databases

BgeeiQ8TC21.
CleanExiHS_ZNF596.
ExpressionAtlasiQ8TC21. baseline and differential.
GenevestigatoriQ8TC21.

Organism-specific databases

HPAiHPA055463.

Interactioni

Protein-protein interaction databases

BioGridi127979. 1 interaction.
IntActiQ8TC21. 1 interaction.
STRINGi9606.ENSP00000310033.

Structurei

3D structure databases

ProteinModelPortaliQ8TC21.
SMRiQ8TC21. Positions 7-47, 110-500.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini7 – 7872KRABPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 11 C2H2-type zinc fingers.PROSITE-ProRule annotation
Contains 1 KRAB domain.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri195 – 21723C2H2-type 1PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri223 – 24523C2H2-type 2PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri251 – 27323C2H2-type 3PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri279 – 30123C2H2-type 4PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri307 – 32923C2H2-type 5PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri335 – 35723C2H2-type 6PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri363 – 38523C2H2-type 7PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri391 – 41323C2H2-type 8PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri419 – 44123C2H2-type 9PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri447 – 46923C2H2-type 10PROSITE-ProRule annotationAdd
BLAST
Zinc fingeri475 – 49723C2H2-type 11PROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiCOG5048.
GeneTreeiENSGT00530000063444.
HOGENOMiHOG000234617.
HOVERGENiHBG018163.
InParanoidiQ8TC21.
KOiK09228.
OMAiSHTQEDP.
PhylomeDBiQ8TC21.
TreeFamiTF338497.

Family and domain databases

Gene3Di3.30.160.60. 11 hits.
InterProiIPR001909. Krueppel-associated_box.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF01352. KRAB. 1 hit.
[Graphical view]
SMARTiSM00349. KRAB. 1 hit.
SM00355. ZnF_C2H2. 11 hits.
[Graphical view]
SUPFAMiSSF109640. SSF109640. 1 hit.
PROSITEiPS50805. KRAB. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 11 hits.
PS50157. ZINC_FINGER_C2H2_2. 11 hits.
[Graphical view]

Sequences (3)i

Sequence statusi: Complete.

This entry describes 3 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q8TC21-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MPSPDSMTFE DIIVDFTQEE WALLDTSQRK LFQDVMLENI SHLVSIGKQL
60 70 80 90 100
CKSVVLSQLE QVEKLSTQRI SLLQGREVGI KHQEIPFIQH IYQKGTSTIS
110 120 130 140 150
TMRSHTQEDP FLCNDLGEDF TQHIALTQNV ITYMRTKHFV SKKFGKIFSD
160 170 180 190 200
WLSFNQHKEI HTKCKSYGSH LFDYAFIQNS ALRPHSVTHT REITLECRVC
210 220 230 240 250
GKTFSKNSNL RRHEMIHTGE KPHGCHLCGK AFTHCSDLRK HERTHTGEKP
260 270 280 290 300
YGCHLCGKAF SKSSNLRRHE MIHTREKAQI CHLCGKAFTH CSDLRKHERT
310 320 330 340 350
HLGDKPYGCL LCGKAFSKCS YLRQHERTHN GEKPYECHLC GKAFSHCSHL
360 370 380 390 400
RQHERSHNGE KPHGCHLCGK AFTESSVLKR HERIHTGEKP YECHVCGKAF
410 420 430 440 450
TESSDLRRHE RTHTGEKPYE CHLCGKAFNH SSVLRRHERT HTGEKPYECN
460 470 480 490 500
ICGKAFNRSY NFRLHRRVHT GEKPYVCPLC GKAFSKFFNL RQHERTHTKK

AMNM
Length:504
Mass (Da):58,513
Last modified:September 1, 2009 - v2
Checksum:i1158FF72312AE7DA
GO
Isoform 2 (identifier: Q8TC21-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     48-117: Missing.

Note: No experimental confirmation available.

Show »
Length:434
Mass (Da):50,536
Checksum:i149F2838E4B41B33
GO
Isoform 3 (identifier: Q8TC21-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-101: Missing.
     235-240: CSDLRK → LIIVNT
     241-504: Missing.

Note: No experimental confirmation available.

Show »
Length:139
Mass (Da):16,188
Checksum:iC762D2408E4F9966
GO

Sequence cautioni

The sequence AAD05197.1 differs from that shown. Reason: Erroneous gene model prediction. Curated
The sequence BAG36241.1 differs from that shown. Reason: Erroneous initiation. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti89 – 891Q → H in AAH26190 (PubMed:15489334).Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti136 – 1361T → K.
Corresponds to variant rs2074718 [ dbSNP | Ensembl ].
VAR_027014
Natural varianti476 – 4761V → G.
Corresponds to variant rs2072174 [ dbSNP | Ensembl ].
VAR_027015

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 101101Missing in isoform 3. 1 PublicationVSP_019801Add
BLAST
Alternative sequencei48 – 11770Missing in isoform 2. CuratedVSP_019802Add
BLAST
Alternative sequencei235 – 2406CSDLRK → LIIVNT in isoform 3. 1 PublicationVSP_019803
Alternative sequencei241 – 504264Missing in isoform 3. 1 PublicationVSP_019804Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK313454 mRNA. Translation: BAG36241.1. Different initiation.
AK093442 mRNA. Translation: BAC04166.1.
AC004908 Genomic DNA. Translation: AAD05197.1. Sequence problems.
BC026190 mRNA. Translation: AAH26190.2.
CCDSiCCDS5951.2. [Q8TC21-1]
RefSeqiNP_001035880.1. NM_001042415.2. [Q8TC21-1]
NP_001035881.1. NM_001042416.2. [Q8TC21-1]
NP_001274183.1. NM_001287254.1. [Q8TC21-1]
NP_001274184.1. NM_001287255.1. [Q8TC21-1]
NP_001274185.1. NM_001287256.1. [Q8TC21-1]
NP_001274328.1. NM_001287399.1.
NP_775810.2. NM_173539.3. [Q8TC21-1]
UniGeneiHs.591388.

Genome annotation databases

EnsembliENST00000308811; ENSP00000310033; ENSG00000172748. [Q8TC21-1]
ENST00000320552; ENSP00000318719; ENSG00000172748. [Q8TC21-1]
ENST00000398612; ENSP00000381613; ENSG00000172748. [Q8TC21-1]
GeneIDi169270.
KEGGihsa:169270.
UCSCiuc003wot.3. human. [Q8TC21-1]

Polymorphism and mutation databases

BioMutaiZNF596.

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK313454 mRNA. Translation: BAG36241.1. Different initiation.
AK093442 mRNA. Translation: BAC04166.1.
AC004908 Genomic DNA. Translation: AAD05197.1. Sequence problems.
BC026190 mRNA. Translation: AAH26190.2.
CCDSiCCDS5951.2. [Q8TC21-1]
RefSeqiNP_001035880.1. NM_001042415.2. [Q8TC21-1]
NP_001035881.1. NM_001042416.2. [Q8TC21-1]
NP_001274183.1. NM_001287254.1. [Q8TC21-1]
NP_001274184.1. NM_001287255.1. [Q8TC21-1]
NP_001274185.1. NM_001287256.1. [Q8TC21-1]
NP_001274328.1. NM_001287399.1.
NP_775810.2. NM_173539.3. [Q8TC21-1]
UniGeneiHs.591388.

3D structure databases

ProteinModelPortaliQ8TC21.
SMRiQ8TC21. Positions 7-47, 110-500.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi127979. 1 interaction.
IntActiQ8TC21. 1 interaction.
STRINGi9606.ENSP00000310033.

PTM databases

PhosphoSiteiQ8TC21.

Polymorphism and mutation databases

BioMutaiZNF596.
DMDMi257050982.

Proteomic databases

PaxDbiQ8TC21.
PRIDEiQ8TC21.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000308811; ENSP00000310033; ENSG00000172748. [Q8TC21-1]
ENST00000320552; ENSP00000318719; ENSG00000172748. [Q8TC21-1]
ENST00000398612; ENSP00000381613; ENSG00000172748. [Q8TC21-1]
GeneIDi169270.
KEGGihsa:169270.
UCSCiuc003wot.3. human. [Q8TC21-1]

Organism-specific databases

CTDi169270.
GeneCardsiGC08P000174.
HGNCiHGNC:27268. ZNF596.
HPAiHPA055463.
neXtProtiNX_Q8TC21.
PharmGKBiPA134901402.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiCOG5048.
GeneTreeiENSGT00530000063444.
HOGENOMiHOG000234617.
HOVERGENiHBG018163.
InParanoidiQ8TC21.
KOiK09228.
OMAiSHTQEDP.
PhylomeDBiQ8TC21.
TreeFamiTF338497.

Enzyme and pathway databases

ReactomeiREACT_12627. Generic Transcription Pathway.

Miscellaneous databases

GenomeRNAii169270.
NextBioi88795.
PROiQ8TC21.

Gene expression databases

BgeeiQ8TC21.
CleanExiHS_ZNF596.
ExpressionAtlasiQ8TC21. baseline and differential.
GenevestigatoriQ8TC21.

Family and domain databases

Gene3Di3.30.160.60. 11 hits.
InterProiIPR001909. Krueppel-associated_box.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF01352. KRAB. 1 hit.
[Graphical view]
SMARTiSM00349. KRAB. 1 hit.
SM00355. ZnF_C2H2. 11 hits.
[Graphical view]
SUPFAMiSSF109640. SSF109640. 1 hit.
PROSITEiPS50805. KRAB. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 11 hits.
PS50157. ZINC_FINGER_C2H2_2. 11 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 3).
    Tissue: Brain and Testis.
  2. "DNA sequence and analysis of human chromosome 8."
    Nusbaum C., Mikkelsen T.S., Zody M.C., Asakawa S., Taudien S., Garber M., Kodira C.D., Schueler M.G., Shimizu A., Whittaker C.A., Chang J.L., Cuomo C.A., Dewar K., FitzGerald M.G., Yang X., Allen N.R., Anderson S., Asakawa T.
    , Blechschmidt K., Bloom T., Borowsky M.L., Butler J., Cook A., Corum B., DeArellano K., DeCaprio D., Dooley K.T., Dorris L. III, Engels R., Gloeckner G., Hafez N., Hagopian D.S., Hall J.L., Ishikawa S.K., Jaffe D.B., Kamat A., Kudoh J., Lehmann R., Lokitsang T., Macdonald P., Major J.E., Matthews C.D., Mauceli E., Menzel U., Mihalev A.H., Minoshima S., Murayama Y., Naylor J.W., Nicol R., Nguyen C., O'Leary S.B., O'Neill K., Parker S.C.J., Polley A., Raymond C.K., Reichwald K., Rodriguez J., Sasaki T., Schilhabel M., Siddiqui R., Smith C.L., Sneddon T.P., Talamas J.A., Tenzin P., Topham K., Venkataraman V., Wen G., Yamazaki S., Young S.K., Zeng Q., Zimmer A.R., Rosenthal A., Birren B.W., Platzer M., Shimizu N., Lander E.S.
    Nature 439:331-335(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Tissue: Testis.

Entry informationi

Entry nameiZN596_HUMAN
AccessioniPrimary (citable) accession number: Q8TC21
Secondary accession number(s): B2R8P4, O95015, Q8N9X0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 11, 2006
Last sequence update: September 1, 2009
Last modified: April 29, 2015
This is version 113 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 8
    Human chromosome 8: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.