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Protein

ABC transporter F family member 4

Gene

abcF4

Organism
Dictyostelium discoideum (Slime mold)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi636 – 6438ATPPROSITE-ProRule annotation
Nucleotide bindingi956 – 9638ATPPROSITE-ProRule annotation

GO - Molecular functioni

  • ATPase activity Source: InterPro
  • ATP binding Source: dictyBase

GO - Biological processi

  • regulation of translational elongation Source: dictyBase
  • sorocarp morphogenesis Source: dictyBase
Complete GO annotation...

Keywords - Biological processi

Transport

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
ABC transporter F family member 4
Gene namesi
Name:abcF4
ORF Names:DDB_G0267436
OrganismiDictyostelium discoideum (Slime mold)
Taxonomic identifieri44689 [NCBI]
Taxonomic lineageiEukaryotaAmoebozoaMycetozoaDictyosteliidaDictyostelium
Proteomesi
  • UP000002195 Componentsi: Chromosome 1, Unassembled WGS sequence

Organism-specific databases

dictyBaseiDDB_G0267436. abcF4.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: dictyBase
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 11421142ABC transporter F family member 4PRO_0000346859Add
BLAST

Proteomic databases

PaxDbiQ8T6B4.

Interactioni

Protein-protein interaction databases

STRINGi44689.DDB0191119.

Structurei

3D structure databases

ProteinModelPortaliQ8T6B4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini604 – 857254ABC transporter 1PROSITE-ProRule annotationAdd
BLAST
Domaini923 – 1139217ABC transporter 2PROSITE-ProRule annotationAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi4 – 564561Lys-richAdd
BLAST
Compositional biasi76 – 17297Gln-richAdd
BLAST
Compositional biasi202 – 568367Glu-richAdd
BLAST

Sequence similaritiesi

Belongs to the ABC transporter superfamily.Curated
Contains 2 ABC transporter domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG0062. Eukaryota.
COG0488. LUCA.
InParanoidiQ8T6B4.
OMAiDWEAEMN.

Family and domain databases

Gene3Di3.40.50.300. 3 hits.
InterProiIPR003593. AAA+_ATPase.
IPR032781. ABC_tran_Xtn.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00005. ABC_tran. 2 hits.
PF12848. ABC_tran_Xtn. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 3 hits.
PROSITEiPS00211. ABC_TRANSPORTER_1. 2 hits.
PS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8T6B4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGPKGKKKGQ SFDDSDEEIN NKKGGNKKGQ QLEDDIPQPV KKGGNKKGQR
60 70 80 90 100
GKQDSDDEPE NIPQPVAKKS NNKKGQRGKQ DSDDEQDEIP QPQKKGGKPA
110 120 130 140 150
PQPQKKGGKQ QDSDDEQDEI PQPVKKGGKP APQKKGGKQQ QQQDSDDEQE
160 170 180 190 200
EIPQPVKKGG KPAPQKKGGK QQDSDDEEDE IPQPVKKGGK PAPQKKGGKQ
210 220 230 240 250
QESEDEDEED EVQQPVKKGG KNDKKKGVKH VEEEEEEEEE EEIEQPVKKG
260 270 280 290 300
GKAPKPKKGG KGSKQESEDE EDDVQQPVKK GGKKDKKKGS KHVEEEEEEE
310 320 330 340 350
EEEEIEQPVK KGSNKKDQKK GGKGKHVEEE EEEEEEEEIE QPVKKGSNKK
360 370 380 390 400
DQKKGGKGKQ QQESEDEEEE IQQPVKKGGK KDKKKGSKHV EEEEEEEEEE
410 420 430 440 450
EEIEQPVKKG GKKDKKSSLE DSMSELSIKS KKGGKGKHVE EEEEQEQEEE
460 470 480 490 500
EEKPKSKSNK KDKKKGKHVE EEEEEEEEEE EKPKSKSNKK DKKKGSKHIE
510 520 530 540 550
EEEEEEEEEE EEEKEEEEEK KMTLAEIRAA KKVKKVDKKE KKKEKEKKKR
560 570 580 590 600
DEQEEDAFEL AKKKQQEEID YDNIDIDDVP GKDAPTYVHL KSSEGLRSKI
610 620 630 640 650
GNDIKFDNLI LSVPGRILLN NASLTLAYGQ KYGFVGRNGI GKSTLVKKIA
660 670 680 690 700
MRDEITIAPH LRVLYVEQEV TGDDTTPLDC VLAADEERKW LLDEEKVLTE
710 720 730 740 750
LEKVNPSWQF DPRQKRNYSL RDIYDRLKEI DADKASIRAA NILIGLGFTF
760 770 780 790 800
EEISVKKSRD YSGGWRMRIA LARALFCKPE VLLLDEPSNH LDLHACVWLE
810 820 830 840 850
KYLNQWDRTL LVVSHEASFL NEVVDNIIYI HDQKLDQYRG NYDAFMKQKS
860 870 880 890 900
VNLRSKEKEK DKQDRKLKKM NEFITKNKNN TQAKQAASRA KKMEKIETIE
910 920 930 940 950
LEREDASLVV DFPQPEHLTP PLLVFKDVCF GYEGRPTMFK KLDIGIDMDS
960 970 980 990 1000
KIALVGMNGV GKSTLMKLMN GDLHETTGYI ERSRKMRVAR FSQHFVDQLD
1010 1020 1030 1040 1050
TTMTPIEYFQ SKFNNPPVQQ IRNHLGRFGI CNSLPLHKIT TLSGGQKSRV
1060 1070 1080 1090 1100
ILAELAWAEP HILLLDEPTN HLDIDAIEAL AEGINAFTGG VVLISHNQHL
1110 1120 1130 1140
INLIAEQIWV VKKDGTIYLY PGTFMDYKNE ISREIDNMVI RS
Length:1,142
Mass (Da):130,225
Last modified:June 1, 2002 - v1
Checksum:i33B1815AB09942DC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF479256 Genomic DNA. Translation: AAL87694.1.
AAFI02000003 Genomic DNA. Translation: EAL73170.1.
RefSeqiXP_647476.1. XM_642384.1.

Genome annotation databases

EnsemblProtistsiDDB0191119; DDB0191119; DDB_G0267436.
GeneIDi8616283.
KEGGiddi:DDB_G0267436.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF479256 Genomic DNA. Translation: AAL87694.1.
AAFI02000003 Genomic DNA. Translation: EAL73170.1.
RefSeqiXP_647476.1. XM_642384.1.

3D structure databases

ProteinModelPortaliQ8T6B4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi44689.DDB0191119.

Proteomic databases

PaxDbiQ8T6B4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiDDB0191119; DDB0191119; DDB_G0267436.
GeneIDi8616283.
KEGGiddi:DDB_G0267436.

Organism-specific databases

dictyBaseiDDB_G0267436. abcF4.

Phylogenomic databases

eggNOGiKOG0062. Eukaryota.
COG0488. LUCA.
InParanoidiQ8T6B4.
OMAiDWEAEMN.

Miscellaneous databases

PROiQ8T6B4.

Family and domain databases

Gene3Di3.40.50.300. 3 hits.
InterProiIPR003593. AAA+_ATPase.
IPR032781. ABC_tran_Xtn.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00005. ABC_tran. 2 hits.
PF12848. ABC_tran_Xtn. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 3 hits.
PROSITEiPS00211. ABC_TRANSPORTER_1. 2 hits.
PS50893. ABC_TRANSPORTER_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiABCF4_DICDI
AccessioniPrimary (citable) accession number: Q8T6B4
Secondary accession number(s): Q55FQ7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: June 1, 2002
Last modified: January 20, 2016
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Dictyostelium discoideum
    Dictyostelium discoideum: entries, gene names and cross-references to dictyBase
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.