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Q8SYM9

- Q8SYM9_DROME

UniProt

Q8SYM9 - Q8SYM9_DROME

Protein
Submitted name:

CG5147

Gene

CG5147-RA

Organism
Drosophila melanogaster (Fruit fly)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 101 (01 Oct 2014)
      Sequence version 1 (01 Jun 2002)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: InterPro
    2. DNA-directed RNA polymerase activity Source: UniProtKB-EC

    GO - Biological processi

    1. transcription from RNA polymerase III promoter Source: InterPro

    Keywords - Molecular functioni

    NucleotidyltransferaseImported, Transferase

    Enzyme and pathway databases

    ReactomeiREACT_208061. RNA Polymerase III Abortive And Retractive Initiation.
    REACT_208381. RNA Polymerase III Chain Elongation.
    REACT_210536. RNA Polymerase III Transcription Initiation From Type 2 Promoter.
    REACT_213041. RNA Polymerase III Transcription Termination.
    REACT_217491. RNA Polymerase III Transcription Initiation From Type 3 Promoter.
    REACT_225508. RNA Polymerase III Transcription Initiation From Type 1 Promoter.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    CG5147Imported (EC:2.7.7.6Imported)
    Submitted name:
    FI04119pImported
    Submitted name:
    RE52148pImported
    Gene namesi
    Name:CG5147-RAImported
    ORF Names:CG5147Imported, Dmel_CG5147Imported
    OrganismiDrosophila melanogaster (Fruit fly)Imported
    Taxonomic identifieri7227 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
    ProteomesiUP000000803: Chromosome 3L

    Organism-specific databases

    FlyBaseiFBgn0036775. CG5147.

    Subcellular locationi

    GO - Cellular componenti

    1. DNA-directed RNA polymerase III complex Source: RefGenome

    Interactioni

    Protein-protein interaction databases

    MINTiMINT-1582164.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG239914.
    GeneTreeiENSGT00390000013948.
    InParanoidiQ8SYM9.
    KOiK03026.
    OMAiVFAPNLN.
    OrthoDBiEOG7J180B.

    Family and domain databases

    InterProiIPR007811. RPC4.
    [Graphical view]
    PANTHERiPTHR13408. PTHR13408. 1 hit.
    PfamiPF05132. RNA_pol_Rpc4. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q8SYM9-1 [UniParc]FASTAAdd to Basket

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    MPAKRMTVTT AAASTISGAS GSTTNNGQSG GGARPLETLN GMTRLTPARD    50
    LTLGGRGAGT ASKKVFAPNL NAVRNKNANV KTSKDTTQPR SGRRGGRGNG 100
    TGATRGRGGN SAGGGNSTLI QTQGLFSEGA GDVHVRRSTG NGTAYARGGE 150
    EVSVTRKRVD RKDDKSQAER IKELLGESDA SGGELSEEEA NKTEMALRPI 200
    LLKEGLWVTQ KTPIAKQEIA SSTSTLKDTL AVAQHLQQLH VAAQAASLEE 250
    PPLQYGRYPR TIGNFLDSSE AQIFLMQLPD VLPCVGDDSE DPEPSKGDHQ 300
    ATSESEPASP ADKCSNGPKG SVLRQLEEGQ IGKILRYKSG RVKLQLGDTR 350
    FDLDMGLDPG FLQELMSVTA NREQRSGNMI NLGPIQAKLK ATPDWVHLFQ 400
    QQDAASKRTN PVPGT 415
    Length:415
    Mass (Da):43,968
    Last modified:June 1, 2002 - v1
    Checksum:iA187316EA49A81D5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE014296 Genomic DNA. Translation: AAF49278.2.
    AY071436 mRNA. Translation: AAL49058.1.
    BT044572 mRNA. Translation: ACI16534.1.
    RefSeqiNP_649028.3. NM_140771.3.
    UniGeneiDm.991.

    Genome annotation databases

    EnsemblMetazoaiFBtr0075136; FBpp0074902; FBgn0036775.
    GeneIDi40002.
    KEGGidme:Dmel_CG5147.
    UCSCiCG5147-RA. d. melanogaster.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE014296 Genomic DNA. Translation: AAF49278.2 .
    AY071436 mRNA. Translation: AAL49058.1 .
    BT044572 mRNA. Translation: ACI16534.1 .
    RefSeqi NP_649028.3. NM_140771.3.
    UniGenei Dm.991.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    MINTi MINT-1582164.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblMetazoai FBtr0075136 ; FBpp0074902 ; FBgn0036775 .
    GeneIDi 40002.
    KEGGi dme:Dmel_CG5147.
    UCSCi CG5147-RA. d. melanogaster.

    Organism-specific databases

    FlyBasei FBgn0036775. CG5147.

    Phylogenomic databases

    eggNOGi NOG239914.
    GeneTreei ENSGT00390000013948.
    InParanoidi Q8SYM9.
    KOi K03026.
    OMAi VFAPNLN.
    OrthoDBi EOG7J180B.

    Enzyme and pathway databases

    Reactomei REACT_208061. RNA Polymerase III Abortive And Retractive Initiation.
    REACT_208381. RNA Polymerase III Chain Elongation.
    REACT_210536. RNA Polymerase III Transcription Initiation From Type 2 Promoter.
    REACT_213041. RNA Polymerase III Transcription Termination.
    REACT_217491. RNA Polymerase III Transcription Initiation From Type 3 Promoter.
    REACT_225508. RNA Polymerase III Transcription Initiation From Type 1 Promoter.

    Miscellaneous databases

    GenomeRNAii 40002.
    NextBioi 816505.
    PROi Q8SYM9.

    Family and domain databases

    InterProi IPR007811. RPC4.
    [Graphical view ]
    PANTHERi PTHR13408. PTHR13408. 1 hit.
    Pfami PF05132. RNA_pol_Rpc4. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome sequence of Drosophila melanogaster."
      Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D.
      , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
      Science 287:2185-2195(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    2. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BerkeleyImported.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    4. Cited for: GENOME REANNOTATION.
      Strain: BerkeleyImported.
    5. "The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective."
      Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., Celniker S.E.
      Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    6. "Heterochromatic sequences in a Drosophila whole-genome shotgun assembly."
      Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., Karpen G.H.
      Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    7. "Combined evidence annotation of transposable elements in genome sequences."
      Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., Ashburner M., Anxolabehere D.
      PLoS Comput. Biol. 1:166-175(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    8. Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Rubin G.
      Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    9. "Drosophila melanogaster release 4 sequence."
      Berkeley Drosophila Genome Project
      Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R., Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C., Rubin G.
      Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    10. "The Release 5.1 annotation of Drosophila melanogaster heterochromatin."
      Smith C.D., Shu S., Mungall C.J., Karpen G.H.
      Science 316:1586-1591(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    11. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BerkeleyImported.
    12. Carlson J., Booth B., Frise E., Park S., Wan K., Yu C., Celniker S.
      Submitted (SEP-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    13. FlyBase
      Submitted (MAR-2014) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.

    Entry informationi

    Entry nameiQ8SYM9_DROME
    AccessioniPrimary (citable) accession number: Q8SYM9
    Secondary accession number(s): Q9VVN3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 1, 2002
    Last sequence update: June 1, 2002
    Last modified: October 1, 2014
    This is version 101 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3