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Q8SYM9

- Q8SYM9_DROME

UniProt

Q8SYM9 - Q8SYM9_DROME

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Protein
Submitted name: CG5147
Gene
CG5147-RA, CG5147, Dmel_CG5147
Organism
Drosophila melanogaster (Fruit fly)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. DNA-directed RNA polymerase activity Source: UniProtKB-EC

GO - Biological processi

  1. transcription from RNA polymerase III promoter Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

NucleotidyltransferaseImported, Transferase

Enzyme and pathway databases

ReactomeiREACT_208061. RNA Polymerase III Abortive And Retractive Initiation.
REACT_208381. RNA Polymerase III Chain Elongation.
REACT_210536. RNA Polymerase III Transcription Initiation From Type 2 Promoter.
REACT_213041. RNA Polymerase III Transcription Termination.
REACT_217491. RNA Polymerase III Transcription Initiation From Type 3 Promoter.
REACT_225508. RNA Polymerase III Transcription Initiation From Type 1 Promoter.

Names & Taxonomyi

Protein namesi
Submitted name:
CG5147Imported (EC:2.7.7.6Imported)
Submitted name:
FI04119pImported
Submitted name:
RE52148pImported
Gene namesi
Name:CG5147-RAImported
ORF Names:CG5147Imported, Dmel_CG5147Imported
OrganismiDrosophila melanogaster (Fruit fly)Imported
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
ProteomesiUP000000803: Chromosome 3L

Organism-specific databases

FlyBaseiFBgn0036775. CG5147.

Subcellular locationi

GO - Cellular componenti

  1. DNA-directed RNA polymerase III complex Source: RefGenome
Complete GO annotation...

Interactioni

Protein-protein interaction databases

MINTiMINT-1582164.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG239914.
GeneTreeiENSGT00390000013948.
InParanoidiQ8SYM9.
KOiK03026.
OMAiVFAPNLN.
OrthoDBiEOG7J180B.

Family and domain databases

InterProiIPR007811. RPC4.
[Graphical view]
PANTHERiPTHR13408. PTHR13408. 1 hit.
PfamiPF05132. RNA_pol_Rpc4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8SYM9-1 [UniParc]FASTAAdd to Basket

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MPAKRMTVTT AAASTISGAS GSTTNNGQSG GGARPLETLN GMTRLTPARD    50
LTLGGRGAGT ASKKVFAPNL NAVRNKNANV KTSKDTTQPR SGRRGGRGNG 100
TGATRGRGGN SAGGGNSTLI QTQGLFSEGA GDVHVRRSTG NGTAYARGGE 150
EVSVTRKRVD RKDDKSQAER IKELLGESDA SGGELSEEEA NKTEMALRPI 200
LLKEGLWVTQ KTPIAKQEIA SSTSTLKDTL AVAQHLQQLH VAAQAASLEE 250
PPLQYGRYPR TIGNFLDSSE AQIFLMQLPD VLPCVGDDSE DPEPSKGDHQ 300
ATSESEPASP ADKCSNGPKG SVLRQLEEGQ IGKILRYKSG RVKLQLGDTR 350
FDLDMGLDPG FLQELMSVTA NREQRSGNMI NLGPIQAKLK ATPDWVHLFQ 400
QQDAASKRTN PVPGT 415
Length:415
Mass (Da):43,968
Last modified:June 1, 2002 - v1
Checksum:iA187316EA49A81D5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE014296 Genomic DNA. Translation: AAF49278.2.
AY071436 mRNA. Translation: AAL49058.1.
BT044572 mRNA. Translation: ACI16534.1.
RefSeqiNP_649028.3. NM_140771.3.
UniGeneiDm.991.

Genome annotation databases

EnsemblMetazoaiFBtr0075136; FBpp0074902; FBgn0036775.
GeneIDi40002.
KEGGidme:Dmel_CG5147.
UCSCiCG5147-RA. d. melanogaster.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE014296 Genomic DNA. Translation: AAF49278.2 .
AY071436 mRNA. Translation: AAL49058.1 .
BT044572 mRNA. Translation: ACI16534.1 .
RefSeqi NP_649028.3. NM_140771.3.
UniGenei Dm.991.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

MINTi MINT-1582164.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblMetazoai FBtr0075136 ; FBpp0074902 ; FBgn0036775 .
GeneIDi 40002.
KEGGi dme:Dmel_CG5147.
UCSCi CG5147-RA. d. melanogaster.

Organism-specific databases

FlyBasei FBgn0036775. CG5147.

Phylogenomic databases

eggNOGi NOG239914.
GeneTreei ENSGT00390000013948.
InParanoidi Q8SYM9.
KOi K03026.
OMAi VFAPNLN.
OrthoDBi EOG7J180B.

Enzyme and pathway databases

Reactomei REACT_208061. RNA Polymerase III Abortive And Retractive Initiation.
REACT_208381. RNA Polymerase III Chain Elongation.
REACT_210536. RNA Polymerase III Transcription Initiation From Type 2 Promoter.
REACT_213041. RNA Polymerase III Transcription Termination.
REACT_217491. RNA Polymerase III Transcription Initiation From Type 3 Promoter.
REACT_225508. RNA Polymerase III Transcription Initiation From Type 1 Promoter.

Miscellaneous databases

GenomeRNAii 40002.
NextBioi 816505.
PROi Q8SYM9.

Family and domain databases

InterProi IPR007811. RPC4.
[Graphical view ]
PANTHERi PTHR13408. PTHR13408. 1 hit.
Pfami PF05132. RNA_pol_Rpc4. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The genome sequence of Drosophila melanogaster."
    Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D.
    , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
    Science 287:2185-2195(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Berkeley.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BerkeleyImported.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Berkeley.
  4. Cited for: GENOME REANNOTATION.
    Strain: Berkeley.
  5. "The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective."
    Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M., Celniker S.E.
    Genome Biol. 3:RESEARCH0084-RESEARCH0084(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Berkeley.
  6. "Heterochromatic sequences in a Drosophila whole-genome shotgun assembly."
    Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G., Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M., Karpen G.H.
    Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Berkeley.
  7. "Combined evidence annotation of transposable elements in genome sequences."
    Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D., Ashburner M., Anxolabehere D.
    PLoS Comput. Biol. 1:166-175(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Berkeley.
  8. Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S., Svirskas R., Rubin G.
    Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  9. "Drosophila melanogaster release 4 sequence."
    Berkeley Drosophila Genome Project
    Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R., Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C., Rubin G.
    Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  10. "The Release 5.1 annotation of Drosophila melanogaster heterochromatin."
    Smith C.D., Shu S., Mungall C.J., Karpen G.H.
    Science 316:1586-1591(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Berkeley.
  11. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Berkeley.
  12. Carlson J., Booth B., Frise E., Park S., Wan K., Yu C., Celniker S.
    Submitted (SEP-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  13. FlyBase
    Submitted (MAR-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ8SYM9_DROME
AccessioniPrimary (citable) accession number: Q8SYM9
Secondary accession number(s): Q9VVN3
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2002
Last sequence update: June 1, 2002
Last modified: September 3, 2014
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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