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Protein

Homeobox-leucine zipper protein HOX21

Gene

HOX21

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Probable transcription factor.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi127 – 186HomeoboxPROSITE-ProRule annotationAdd BLAST60

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Homeobox-leucine zipper protein HOX21
Alternative name(s):
HD-ZIP protein HOX21
Homeodomain transcription factor HOX21
OsHox21
Gene namesi
Name:HOX21
Ordered Locus Names:Os03g0170600, LOC_Os03g07450
ORF Names:OSJNBa0091P11.3
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 3

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003317151 – 366Homeobox-leucine zipper protein HOX21Add BLAST366

Proteomic databases

PaxDbiQ8S7W9

Expressioni

Tissue specificityi

Expressed in seedlings, roots, stems, leaf blades and panicles.1 Publication

Gene expression databases

ExpressionAtlasiQ8S7W9 differential

Structurei

3D structure databases

ProteinModelPortaliQ8S7W9
SMRiQ8S7W9
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni185 – 229Leucine-zipperAdd BLAST45

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi31 – 72His-richAdd BLAST42
Compositional biasi63 – 77Pro-richAdd BLAST15
Compositional biasi103 – 109Poly-Gly7
Compositional biasi274 – 278Poly-His5
Compositional biasi279 – 331Gly-richAdd BLAST53

Sequence similaritiesi

Keywords - Domaini

Homeobox

Phylogenomic databases

eggNOGiKOG0483 Eukaryota
ENOG410Z2UE LUCA
HOGENOMiHOG000006025
InParanoidiQ8S7W9
KOiK09338

Family and domain databases

CDDicd00086 homeodomain, 1 hit
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017970 Homeobox_CS
IPR001356 Homeobox_dom
IPR000047 HTH_motif
IPR003106 Leu_zip_homeo
PfamiView protein in Pfam
PF02183 HALZ, 1 hit
PF00046 Homeobox, 1 hit
PRINTSiPR00031 HTHREPRESSR
SMARTiView protein in SMART
SM00389 HOX, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS00027 HOMEOBOX_1, 1 hit
PS50071 HOMEOBOX_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q8S7W9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASNGMASSP SSFFPPNFLL HMAQQQAAPP HDPQEHHHHH HHGHHGHHHE
60 70 80 90 100
QQQQQQHHHH LGPPPPPPPH PHNPFLPSSA QCPSLQEFRG MAPMLGKRPM
110 120 130 140 150
SYGDGGGGGD EVNGGGEDEL SDDGSQAGEK KRRLNVEQVR TLEKNFELGN
160 170 180 190 200
KLEPERKMQL ARALGLQPRQ VAIWFQNRRA RWKTKQLEKD YDALKRQLDA
210 220 230 240 250
VKAENDALLN HNKKLQAEIV ALKGREAASE LINLNKETEA SCSNRSENSS
260 270 280 290 300
EINLDISRTP PPDAAALDTA PTAHHHHHGG GGGGGGGGGM IPFYTSIARP
310 320 330 340 350
ASGGGVDIDQ LLHSSSGGAG GPKMEHHGGG GNVQAASVDT ASFGNLLCGV
360
DEPPPFWPWP DHQHFH
Length:366
Mass (Da):39,624
Last modified:June 1, 2002 - v1
Checksum:i025240215FE9E2F3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC073556 Genomic DNA Translation: AAL84311.1
DP000009 Genomic DNA Translation: ABF94207.1
AP008209 Genomic DNA Translation: BAF11024.1
AP014959 Genomic DNA No translation available.
AY554028 mRNA Translation: AAS83416.1
RefSeqiXP_015629266.1, XM_015773780.1
UniGeneiOs.49753

Genome annotation databases

GeneIDi4331774
KEGGiosa:4331774

Similar proteinsi

Entry informationi

Entry nameiHOX21_ORYSJ
AccessioniPrimary (citable) accession number: Q8S7W9
Secondary accession number(s): Q6Q7E4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: June 1, 2002
Last modified: May 23, 2018
This is version 104 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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