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Reviewed, UniProtKB/Swiss-Prot Q8S3N2 (DCOR_CAPAN)

Last modified June 16, 2009. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    Ornithine decarboxylase
      Short name=ODC
    EC=4.1.1.17
Alternative name(s):
    CapODC
    CaODC1
Gene names
Name: ODC
Synonyms: CUKM10
OrganismCapsicum annuum (Bell pepper)
Taxonomic identifier4072 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › asterids › lamiids › Solanales › Solanaceae › Solanoideae › Capsiceae › Capsicum

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Protein attributes

Sequence length435 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at transcript level.

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General annotation (Comments)

Catalytic activity

L-ornithine = putrescine + CO2.

Cofactor

Pyridoxal phosphate.

Pathway

Amine and polyamine biosynthesis; putrescine biosynthesis via L-ornithine pathway; putrescine from L-ornithine: step 1/1.

Induction

By virus infection. Up-regulated during the later stages of ripening. Ref.1 Ref.2

Sequence similarities

Belongs to the Orn/Lys/Arg decarboxylase class-II family.

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Ontologies

Keywords
   Biological processPolyamine biosynthesis
   LigandPyridoxal phosphate
   Molecular functionDecarboxylase
Lyase
Gene Ontology (GO)
   Biological processpolyamine biosynthetic process

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionornithine decarboxylase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 435435Ornithine decarboxylase
PRO_0000239254

Sites

Active site3801Proton donor; shared with dimeric partner By similarity

Amino acid modifications

Modified residue981N6-(pyridoxal phosphate)lysine By similarity

Experimental info

Sequence conflict651E → K in AAL83709. Ref.2
Sequence conflict921R → H in AAL83709. Ref.2
Sequence conflict1171V → D in AAL83709. Ref.2
Sequence conflict391 – 3922HV → QL in AAL83709. Ref.2
Sequence conflict4011V → L in AAL83709. Ref.2

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Sequences

Sequence LengthMass (Da)Tools
Q8S3N2-1 [UniParc].

Last modified June 1, 2002. Version 1.
Checksum: CC38830BFD7B1B76

FASTA43546,906
        10         20         30         40         50         60 
MAGQTVIVSG LNPAAILQST IGGAPPSTAA AAAENGDTTR KVVPLSKDAL QDFMVSIITQ 

        70         80         90        100        110        120 
KLQGEKKPFY VLDLGEVVSL MDQWNVALPN VRPFYAVKCN PEPSFLSMLA AMGSNFVCAS 

       130        140        150        160        170        180 
RAEIEYVLSL GISPERIVFA NPCKPESDII FAEKVGVNLT TYDSEDEVYK IKKHHPKCEL 

       190        200        210        220        230        240 
LLRIKPMNDG NARCPMGPKY GALPEEIEPL LRIAQASRLT VSGVSFHIGS GDADSNAYLG 

       250        260        270        280        290        300 
AIAAAKQVFE TAAKFGMSKM NVLDIGGGFT SGHQFTTAAT AVKSALQQHF SNEPELTIIA 

       310        320        330        340        350        360 
EPGRFFAETA FTLATTIIGK RVRGDLREYW INDGLYGSMN CVLYDHATVT ATPLACMSNR 

       370        380        390        400        410        420 
VNLNCSGSKM FPSTIFGPTC DALDTVLRDY HVPELQVNDW VIFPNMGAYT KAAGSNFNGF 

       430 
NTSAIVTHLA YAYPS

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References

[1]"Molecular cloning and sequence analysis of a cDNA encoding ornithine decarboxylase cDNA from chilli (Capsicum annuum)."
Zainal Z., Sajari R., Ismail I.
J. Biochem. Mol. Biol. Biophys. 6:415-419(2002) [PubMed: 14972797] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA], INDUCTION.
Strain: cv. MC11.
Tissue: Fruit.
[2]"A hot pepper cDNA encoding ornithine decarboxylase is induced during the resistance response to tobacco mosaic virus."
Yoo T.H., Park C.-J., Lee G.-J., Shin R., Kim K.-J., Yun J.-H., Paek K.-H.
Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [MRNA], INDUCTION.

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Cross-references

Sequence databases

AF480882 mRNA. Translation: AAL87201.1.
AY078081 mRNA. Translation: AAL83709.1.

3D structure databases

HSSPHSSP built from PDB template 1NJJ based on UniProtKB Q9TZZ6.
ModBaseSearch...

Enzyme and pathway databases

BRENDA4.1.1.17. 1261.

Family and domain databases

InterProIPR000183. De-COase2.
IPR002433. Orn_de-COase.
[Graphical view]
PfamPF02784. Orn_Arg_deC_N. 1 hit.
PF00278. Orn_DAP_Arg_deC. 1 hit.
[Graphical view]
PRINTSPR01179. ODADCRBXLASE.
PR01182. ORNDCRBXLASE.
PROSITEPS00878. ODR_DC_2_1. 1 hit.
PS00879. ODR_DC_2_2. 1 hit.
[Graphical view]
ProtoNetSearch...

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Entry information

Entry nameDCOR_CAPAN
AccessionPrimary (citable) accession number: Q8S3N2
Secondary accession number(s): Q84UH2
Entry history
Integrated into UniProtKB/Swiss-Prot: May 30, 2006
Last sequence update: June 1, 2002
Last modified: June 16, 2009
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectPPAP (Plant Proteome Annotation Project)

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Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents