Q8S3N2 (DCOR_CAPAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
September 21, 2011.
Version 47.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Ornithine decarboxylase Short name=ODC EC=4.1.1.17 Alternative name(s): CaODC1 CapODC | ||||
| Gene names |
| ||||
| Organism | Capsicum annuum (Bell pepper) | ||||
| Taxonomic identifier | 4072 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › asterids › lamiids › Solanales › Solanaceae › Solanoideae › Capsiceae › Capsicum |
Protein attributes
| Sequence length | 435 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at transcript level |
General annotation (Comments)
| Catalytic activity | L-ornithine = putrescine + CO2. |
| Cofactor | Pyridoxal phosphate. |
| Pathway | |
| Induction | By virus infection. Up-regulated during the later stages of ripening. Ref.1 Ref.2 |
| Sequence similarities | Belongs to the Orn/Lys/Arg decarboxylase class-II family. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Polyamine biosynthesis |
| Ligand | Pyridoxal phosphate |
| Molecular function | Decarboxylase Lyase |
| Gene Ontology (GO) | |
| Biological process | polyamine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-KW |
| Molecular function | ornithine decarboxylase activity Inferred from electronic annotation. Source: EC |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 435 | 435 | Ornithine decarboxylase | PRO_0000239254 | |||||
Sites | |||||||||
| Active site | 380 | 1 | Proton donor; shared with dimeric partner By similarity | ||||||
Amino acid modifications | |||||||||
| Modified residue | 98 | 1 | N6-(pyridoxal phosphate)lysine By similarity | ||||||
Experimental info | |||||||||
| Sequence conflict | 65 | 1 | E → K in AAL83709. Ref.2 | ||||||
| Sequence conflict | 92 | 1 | R → H in AAL83709. Ref.2 | ||||||
| Sequence conflict | 117 | 1 | V → D in AAL83709. Ref.2 | ||||||
| Sequence conflict | 391 – 392 | 2 | HV → QL in AAL83709. Ref.2 | ||||||
| Sequence conflict | 401 | 1 | V → L in AAL83709. Ref.2 | ||||||
Sequences
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References
| [1] | "Molecular cloning and sequence analysis of a cDNA encoding ornithine decarboxylase cDNA from chilli (Capsicum annuum)." Zainal Z., Sajari R., Ismail I. J. Biochem. Mol. Biol. Biophys. 6:415-419(2002) [PubMed: 14972797] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], INDUCTION. Strain: cv. MC11. Tissue: Fruit. |
| [2] | "A hot pepper cDNA encoding ornithine decarboxylase is induced during the resistance response to tobacco mosaic virus." Yoo T.H., Park C.-J., Lee G.-J., Shin R., Kim K.-J., Yun J.-H., Paek K.-H. Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA], INDUCTION. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF480882 mRNA. Translation: AAL87201.1. AY078081 mRNA. Translation: AAL83709.1. |
3D structure databases | |
| ProteinModelPortal | Q8S3N2. |
| ModBase | Search... |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Enzyme and pathway databases | |
| BioCyc | MetaCyc:MONOMER-14989. |
Family and domain databases | |
| InterPro | IPR009006. Ala_racemase/Decarboxylase_C. IPR022643. De-COase2_C. IPR022657. De-COase2_CS. IPR022644. De-COase2_N. IPR022653. De-COase2_pyr-phos_BS. IPR000183. Orn/DAP/Arg_de-COase. IPR002433. Orn_de-COase. [Graphical view] |
| Gene3D | G3DSA:2.40.37.10. Ala_racemase/Decarboxylase_C. 1 hit. |
| Pfam | PF02784. Orn_Arg_deC_N. 1 hit. PF00278. Orn_DAP_Arg_deC. 1 hit. [Graphical view] |
| PRINTS | PR01179. ODADCRBXLASE. PR01182. ORNDCRBXLASE. |
| SUPFAM | SSF50621. Racem_decarbox_C. 1 hit. |
| PROSITE | PS00878. ODR_DC_2_1. 1 hit. PS00879. ODR_DC_2_2. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | DCOR_CAPAN | ||||||||
| Accession | Primary (citable) accession number: Q8S3N2 Secondary accession number(s): Q84UH2 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Plant Protein Annotation Program | ||||||||
Relevant documents
| PATHWAY comments Index of metabolic and biosynthesis pathways |
| SIMILARITY comments Index of protein domains and families |

Clusters with