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Protein

Long chain base biosynthesis protein 2c

Gene

Os01g0928700

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Serine palmitoyltransferase (SPT). The heterodimer formed with LCB1 constitutes the catalytic core (By similarity).By similarity

Catalytic activityi

Palmitoyl-CoA + L-serine = CoA + 3-dehydro-D-sphinganine + CO2.

Cofactori

Pathwayi: sphingolipid metabolism

This protein is involved in the pathway sphingolipid metabolism, which is part of Lipid metabolism.
View all proteins of this organism that are known to be involved in the pathway sphingolipid metabolism and in Lipid metabolism.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionAcyltransferase, Transferase
Biological processLipid metabolism, Sphingolipid metabolism
LigandPyridoxal phosphate

Enzyme and pathway databases

UniPathwayiUPA00222

Names & Taxonomyi

Protein namesi
Recommended name:
Long chain base biosynthesis protein 2c (EC:2.3.1.50)
Gene namesi
Ordered Locus Names:Os01g0928700, LOC_Os01g70370
ORF Names:OsJ_04634, OSJNBa0052O12.13
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei4 – 24HelicalSequence analysisAdd BLAST21

Keywords - Cellular componenti

Endoplasmic reticulum, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004191521 – 497Long chain base biosynthesis protein 2cAdd BLAST497

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei319N6-(pyridoxal phosphate)lysineBy similarity1

Proteomic databases

PaxDbiQ8RYL0

Expressioni

Gene expression databases

ExpressionAtlasiQ8RYL0 baseline and differential
GenevisibleiQ8RYL0 OS

Interactioni

Subunit structurei

Heterodimer with LCB1. Component of the serine palmitoyltransferase (SPT) complex, composed of LCB1 and LCB2 (By similarity).By similarity

Protein-protein interaction databases

STRINGi39947.LOC_Os01g70370.1

Structurei

3D structure databases

ProteinModelPortaliQ8RYL0
SMRiQ8RYL0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG1357 Eukaryota
COG0156 LUCA
InParanoidiQ8RYL0
KOiK00654
OMAiTLNMSSY
OrthoDBiEOG0936074X

Family and domain databases

Gene3Di3.40.640.101 hit
3.90.1150.102 hits
InterProiView protein in InterPro
IPR001917 Aminotrans_II_pyridoxalP_BS
IPR004839 Aminotransferase_I/II
IPR015424 PyrdxlP-dep_Trfase
IPR015422 PyrdxlP-dep_Trfase_dom1
IPR015421 PyrdxlP-dep_Trfase_major
PfamiView protein in Pfam
PF00155 Aminotran_1_2, 1 hit
SUPFAMiSSF53383 SSF53383, 1 hit
PROSITEiView protein in PROSITE
PS00599 AA_TRANSFER_CLASS_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q8RYL0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVRVPFVTAV TTVFSYGVIF GFGHLRDWFR ALLRSLFSGH SPAAAGTNLK
60 70 80 90 100
GYAPICGGQE DFYYRRFVRR VQDCFWRPIA SKPDAWFDVV ERYSNDSNKT
110 120 130 140 150
LHRTTKTSRC LNLGSYNYLG FAAADEYCTP RVIESLKKYS ASTCSVRVDG
160 170 180 190 200
GNTKLHVELE ELVARFVGKP AAILFGMGYV TNSAIIPALI GKGGLIISDS
210 220 230 240 250
LNHNSIVNGA RGSGASVQVF QHNNPAHLEE VLREQIAGGQ PRTHRRWKKI
260 270 280 290 300
IVIVEGIYSM EGELCKLPEI VAVCKKYKAY TYLDEAHSIG AVGKTGRGVC
310 320 330 340 350
ELLGVDPADV DIMMGTFTKS FGSCGGYIAA SKEIIDHLKH ICPAHIYATS
360 370 380 390 400
MSPPAVQQVI SAIEVILGED GSDRGAKKLA QIRENSNFFR SELEKMGFEV
410 420 430 440 450
LGDNDSPVMP IMLYNPAKMP AFSRECLRQK VAIVTVSFPA TPLLLARARI
460 470 480 490
CISASHSRED LIKGLEVISK VGDLVGIKYL PVEHEKTTSA EKLKKIQ
Length:497
Mass (Da):54,647
Last modified:June 1, 2002 - v1
Checksum:i7EF5833AA6538DB5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP004330 Genomic DNA Translation: BAB90752.1
AP008207 Genomic DNA Translation: BAF07192.1
AP014957 Genomic DNA Translation: BAS76015.1
CM000138 Genomic DNA Translation: EAZ14710.1
RefSeqiXP_015613384.1, XM_015757898.1

Genome annotation databases

EnsemblPlantsiOs01t0928700-00; Os01t0928700-00; Os01g0928700
GeneIDi4326965
GrameneiOs01t0928700-00; Os01t0928700-00; Os01g0928700
KEGGiosa:4326965

Similar proteinsi

Entry informationi

Entry nameiLCB2C_ORYSJ
AccessioniPrimary (citable) accession number: Q8RYL0
Secondary accession number(s): A0A0P0VCB1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 3, 2012
Last sequence update: June 1, 2002
Last modified: March 28, 2018
This is version 110 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome