Reviewed, UniProtKB/Swiss-Prot Q8RU33 (VA0D_ORYSJ)

Names and origin

Protein names

Recommended name:
    Probable V-type proton ATPase subunit d
      Short name=V-ATPase subunit d
Alternative name(s):
    Vacuolar proton pump subunit d

Gene names

Ordered Locus Names:	Os01g0587000, LOC_Os01g40470
ORF Names:	P0700A11.10

Organism

Oryza sativa subsp. japonica (Rice)

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza

Protein attributes

Sequence length	351 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Function	Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.
Subunit structure	V-ATPase is an heteromultimeric enzyme composed of a peripheral catalytic V1 complex (components A to H) attached to an integral membrane V0 proton pore complex (components: a, c, c', c'' and d).
Sequence similarities	Belongs to the V-ATPase V0D/AC39 subunit family.

Ontologies

Keywords
Biological process	Hydrogen ion transport Ion transport Transport
Gene Ontology (GO)
Biological process	ATP synthesis coupled proton transport Inferred from electronic annotation. Source: InterPro
Cellular component	proton-transporting V-type ATPase, V0 domain Inferred from electronic annotation. Source: InterPro
Molecular function	hydrogen ion transmembrane transporter activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 351	351	Probable V-type proton ATPase subunit d		PRO_0000247628

Sequences

	Sequence		Length	Mass (Da)
	Q8RU33-1 [UniParc]. Last modified June 1, 2002. Version 1. Checksum: 0E36E7FBEEECFD10	FASTA	351	40,785
	10 20 30 40 50 60 MYGWEMLSFN IHDGFLEAIV RGNRSGLLTA ADYNNLCQCE NLDDVKMHLT ATEYGPYLQN 70 80 90 100 110 120 EPSPLHTTTI VEKCTLKLVD EYKHMMCQAT EPLSTFLQYI TYGHMIDNVV LIVTGTLHER 130 140 150 160 170 180 DVNELLEKCH PLGMFDSIAS LAVAQNMREL YRLVLVDTPL APYFSECITS EDLDDMNIEI 190 200 210 220 230 240 MRNTLYKAYL EDFYKFCEKL GGATAEIMCD LLSFEADRRA VNITINSIGT ELTRDDRRKL 250 260 270 280 290 300 YSNFGLLYPY GHEELAVCED VDQVRGVMEK YPPYQAIFAK ISYGESQMLD KAFYEEEVRR 310 320 330 340 350 LCLSFEQQFH YAVFFAYIRL REQEIRNLMW ISECVAQNQK NRVHDSVVFI F

References

[1]

"The genome sequence and structure of rice chromosome 1." Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M. , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T. Nature 420:312-316(2002) [PubMed: 12447438] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.

[2]

"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice." The rice full-length cDNA consortium Science 301:376-379(2003) [PubMed: 12869764] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Nipponbare.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AP003300 Genomic DNA. Translation: BAB89911.1. AK067605 mRNA. No translation available.
RefSeq	NP_001043429.1.
UniGene	Os.8078
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	4327660.
KEGG	osa:4327660.
NMPDR	fig|39947.1.peg.9499.
Organism-specific databases
Gramene	Q8RU33.
Family and domain databases
InterPro	IPR016727. ATPase_V0-cplx_dsu. IPR002843. ATPase_V0/A0-cplx_csu/dsu. [Graphical view]
Pfam	PF01992. vATP-synt_AC39. 1 hit. [Graphical view]
PIRSF	PIRSF018497. V-ATP_synth_D. 1 hit.
ProtoNet	Search...

Entry information

Entry name

VA0D_ORYSJ

Accession

Primary (citable) accession number: Q8RU33

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 25, 2006
Last sequence update:	June 1, 2002
Last modified:	October 13, 2009
This is version 38 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

PPAP (Plant Proteome Annotation Project)