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Q8RR57

- SSRP_THET8

UniProt

Q8RR57 - SSRP_THET8

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Protein

SsrA-binding protein

Gene

smpB

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

Binds specifically to the SsrA RNA (tmRNA) and is required for stable association of SsrA with ribosomes.UniRule annotation

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Ligandi

RNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-935-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
SsrA-binding proteinUniRule annotation
Gene namesi
Name:smpBUniRule annotation
Ordered Locus Names:TTHA0902
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 144144SsrA-binding proteinPRO_0000103056Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi300852.TTHA0902.

Structurei

Secondary structure

1
144
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi8 – 136Combined sources
Beta strandi14 – 2411Combined sources
Helixi30 – 356Combined sources
Beta strandi45 – 495Combined sources
Beta strandi52 – 576Combined sources
Beta strandi60 – 634Combined sources
Turni65 – 684Combined sources
Beta strandi77 – 804Combined sources
Helixi83 – 897Combined sources
Turni90 – 923Combined sources
Turni94 – 974Combined sources
Beta strandi98 – 10710Combined sources
Turni109 – 1113Combined sources
Beta strandi113 – 12210Combined sources
Helixi133 – 14311Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1J1HNMR-A1-144[»]
1WJXX-ray1.70A2-123[»]
2CZJX-ray3.01A/C/E/G1-123[»]
3IYQelectron microscopy-B2-144[»]
3IYRelectron microscopy-B2-144[»]
3IZ4electron microscopy-B2-123[»]
3J18electron microscopy8.30W1-123[»]
4ABRX-ray3.1021-144[»]
ProteinModelPortaliQ8RR57.
SMRiQ8RR57. Positions 1-123.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8RR57.

Family & Domainsi

Sequence similaritiesi

Belongs to the SmpB family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0691.
HOGENOMiHOG000009628.
KOiK03664.
OMAiSASTHVI.
OrthoDBiEOG6HXJ9P.
PhylomeDBiQ8RR57.

Family and domain databases

Gene3Di2.40.280.10. 1 hit.
HAMAPiMF_00023. SmpB.
InterProiIPR023620. SmpB.
IPR000037. SsrA-bd_prot.
IPR020081. SsrA-bd_prot_CS.
[Graphical view]
PfamiPF01668. SmpB. 1 hit.
[Graphical view]
ProDomiPD004488. SmpB. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF74982. SSF74982. 1 hit.
TIGRFAMsiTIGR00086. smpB. 1 hit.
PROSITEiPS01317. SSRP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8RR57-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAPVLENRRA RHDYEILETY EAGIALKGTE VKSLRAGKVD FTGSFARFED
60 70 80 90 100
GELYLENLYI APYEKGSYAN VDPRRKRKLL LHKHELRRLL GKVEQKGLTL
110 120 130 140
VPLKIYFNER GYAKVLLGLA RGKKAYEKRR EDKKEAVRRA LEEL
Length:144
Mass (Da):16,750
Last modified:June 1, 2002 - v1
Checksum:i4691B4D48F1A2299
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB070601 Genomic DNA. Translation: BAB86918.1.
AP008226 Genomic DNA. Translation: BAD70725.1.
RefSeqiYP_144168.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70725; BAD70725; BAD70725.
GeneIDi3169917.
KEGGittj:TTHA0902.
PATRICi23956784. VBITheThe93045_0894.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB070601 Genomic DNA. Translation: BAB86918.1 .
AP008226 Genomic DNA. Translation: BAD70725.1 .
RefSeqi YP_144168.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1J1H NMR - A 1-144 [» ]
1WJX X-ray 1.70 A 2-123 [» ]
2CZJ X-ray 3.01 A/C/E/G 1-123 [» ]
3IYQ electron microscopy - B 2-144 [» ]
3IYR electron microscopy - B 2-144 [» ]
3IZ4 electron microscopy - B 2-123 [» ]
3J18 electron microscopy 8.30 W 1-123 [» ]
4ABR X-ray 3.10 2 1-144 [» ]
ProteinModelPortali Q8RR57.
SMRi Q8RR57. Positions 1-123.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 300852.TTHA0902.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD70725 ; BAD70725 ; BAD70725 .
GeneIDi 3169917.
KEGGi ttj:TTHA0902.
PATRICi 23956784. VBITheThe93045_0894.

Phylogenomic databases

eggNOGi COG0691.
HOGENOMi HOG000009628.
KOi K03664.
OMAi SASTHVI.
OrthoDBi EOG6HXJ9P.
PhylomeDBi Q8RR57.

Enzyme and pathway databases

BioCyci TTHE300852:GH8R-935-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q8RR57.

Family and domain databases

Gene3Di 2.40.280.10. 1 hit.
HAMAPi MF_00023. SmpB.
InterProi IPR023620. SmpB.
IPR000037. SsrA-bd_prot.
IPR020081. SsrA-bd_prot_CS.
[Graphical view ]
Pfami PF01668. SmpB. 1 hit.
[Graphical view ]
ProDomi PD004488. SmpB. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
SUPFAMi SSF74982. SSF74982. 1 hit.
TIGRFAMsi TIGR00086. smpB. 1 hit.
PROSITEi PS01317. SSRP. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Interaction of tmRNA with a tmRNA-binding protein, SmpB, from Thermus thermophilus."
    Nameki N., Kimoto M., Terada T., Shirouzu M., Suetsugu-Hanawa K., Takaku H., Himeno H., Muto A., Inoue Y., Shibata T., Kuramitsu S., Yokoyama S., Kawai G.
    Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  3. "Crystal structure of the tRNA domain of tmRNA from Thermus thermophilus HB8."
    RIKEN structural genomics initiative (RSGI)
    Submitted (OCT-2006) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (3.01 ANGSTROMS) OF 1-123.

Entry informationi

Entry nameiSSRP_THET8
AccessioniPrimary (citable) accession number: Q8RR57
Secondary accession number(s): Q5SMG1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 23, 2003
Last sequence update: June 1, 2002
Last modified: November 26, 2014
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3