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Q8RR57

- SSRP_THET8

UniProt

Q8RR57 - SSRP_THET8

Protein

SsrA-binding protein

Gene

smpB

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 78 (01 Oct 2014)
      Sequence version 1 (01 Jun 2002)
      Previous versions | rss
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    Functioni

    Binds specifically to the SsrA RNA (tmRNA) and is required for stable association of SsrA with ribosomes.UniRule annotation

    GO - Molecular functioni

    1. RNA binding Source: UniProtKB-KW

    Keywords - Ligandi

    RNA-binding

    Enzyme and pathway databases

    BioCyciTTHE300852:GH8R-935-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    SsrA-binding proteinUniRule annotation
    Gene namesi
    Name:smpBUniRule annotation
    Ordered Locus Names:TTHA0902
    OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
    Taxonomic identifieri300852 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000532: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 144144SsrA-binding proteinPRO_0000103056Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi300852.TTHA0902.

    Structurei

    Secondary structure

    1
    144
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi8 – 136
    Beta strandi14 – 2411
    Helixi30 – 356
    Beta strandi45 – 495
    Beta strandi52 – 576
    Beta strandi60 – 634
    Turni65 – 684
    Beta strandi77 – 804
    Helixi83 – 897
    Turni90 – 923
    Turni94 – 974
    Beta strandi98 – 10710
    Turni109 – 1113
    Beta strandi113 – 12210
    Helixi133 – 14311

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1J1HNMR-A1-144[»]
    1WJXX-ray1.70A2-123[»]
    2CZJX-ray3.01A/C/E/G1-123[»]
    3IYQelectron microscopy-B2-144[»]
    3IYRelectron microscopy-B2-144[»]
    3IZ4electron microscopy-B2-123[»]
    3J18electron microscopy8.30W1-123[»]
    4ABRX-ray3.1021-144[»]
    ProteinModelPortaliQ8RR57.
    SMRiQ8RR57. Positions 1-123.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ8RR57.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the SmpB family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0691.
    HOGENOMiHOG000009628.
    KOiK03664.
    OMAiSASTHVI.
    OrthoDBiEOG6HXJ9P.
    PhylomeDBiQ8RR57.

    Family and domain databases

    Gene3Di2.40.280.10. 1 hit.
    HAMAPiMF_00023. SmpB.
    InterProiIPR023620. SmpB.
    IPR000037. SsrA-bd_prot.
    IPR020081. SsrA-bd_prot_CS.
    [Graphical view]
    PfamiPF01668. SmpB. 1 hit.
    [Graphical view]
    ProDomiPD004488. SmpB. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SUPFAMiSSF74982. SSF74982. 1 hit.
    TIGRFAMsiTIGR00086. smpB. 1 hit.
    PROSITEiPS01317. SSRP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q8RR57-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAPVLENRRA RHDYEILETY EAGIALKGTE VKSLRAGKVD FTGSFARFED    50
    GELYLENLYI APYEKGSYAN VDPRRKRKLL LHKHELRRLL GKVEQKGLTL 100
    VPLKIYFNER GYAKVLLGLA RGKKAYEKRR EDKKEAVRRA LEEL 144
    Length:144
    Mass (Da):16,750
    Last modified:June 1, 2002 - v1
    Checksum:i4691B4D48F1A2299
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB070601 Genomic DNA. Translation: BAB86918.1.
    AP008226 Genomic DNA. Translation: BAD70725.1.
    RefSeqiWP_011172991.1. NC_006461.1.
    YP_144168.1. NC_006461.1.

    Genome annotation databases

    EnsemblBacteriaiBAD70725; BAD70725; BAD70725.
    GeneIDi3169917.
    KEGGittj:TTHA0902.
    PATRICi23956784. VBITheThe93045_0894.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB070601 Genomic DNA. Translation: BAB86918.1 .
    AP008226 Genomic DNA. Translation: BAD70725.1 .
    RefSeqi WP_011172991.1. NC_006461.1.
    YP_144168.1. NC_006461.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1J1H NMR - A 1-144 [» ]
    1WJX X-ray 1.70 A 2-123 [» ]
    2CZJ X-ray 3.01 A/C/E/G 1-123 [» ]
    3IYQ electron microscopy - B 2-144 [» ]
    3IYR electron microscopy - B 2-144 [» ]
    3IZ4 electron microscopy - B 2-123 [» ]
    3J18 electron microscopy 8.30 W 1-123 [» ]
    4ABR X-ray 3.10 2 1-144 [» ]
    ProteinModelPortali Q8RR57.
    SMRi Q8RR57. Positions 1-123.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 300852.TTHA0902.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAD70725 ; BAD70725 ; BAD70725 .
    GeneIDi 3169917.
    KEGGi ttj:TTHA0902.
    PATRICi 23956784. VBITheThe93045_0894.

    Phylogenomic databases

    eggNOGi COG0691.
    HOGENOMi HOG000009628.
    KOi K03664.
    OMAi SASTHVI.
    OrthoDBi EOG6HXJ9P.
    PhylomeDBi Q8RR57.

    Enzyme and pathway databases

    BioCyci TTHE300852:GH8R-935-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q8RR57.

    Family and domain databases

    Gene3Di 2.40.280.10. 1 hit.
    HAMAPi MF_00023. SmpB.
    InterProi IPR023620. SmpB.
    IPR000037. SsrA-bd_prot.
    IPR020081. SsrA-bd_prot_CS.
    [Graphical view ]
    Pfami PF01668. SmpB. 1 hit.
    [Graphical view ]
    ProDomi PD004488. SmpB. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SUPFAMi SSF74982. SSF74982. 1 hit.
    TIGRFAMsi TIGR00086. smpB. 1 hit.
    PROSITEi PS01317. SSRP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Interaction of tmRNA with a tmRNA-binding protein, SmpB, from Thermus thermophilus."
      Nameki N., Kimoto M., Terada T., Shirouzu M., Suetsugu-Hanawa K., Takaku H., Himeno H., Muto A., Inoue Y., Shibata T., Kuramitsu S., Yokoyama S., Kawai G.
      Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. "Complete genome sequence of Thermus thermophilus HB8."
      Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
      Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB8 / ATCC 27634 / DSM 579.
    3. "Crystal structure of the tRNA domain of tmRNA from Thermus thermophilus HB8."
      RIKEN structural genomics initiative (RSGI)
      Submitted (OCT-2006) to the PDB data bank
      Cited for: X-RAY CRYSTALLOGRAPHY (3.01 ANGSTROMS) OF 1-123.

    Entry informationi

    Entry nameiSSRP_THET8
    AccessioniPrimary (citable) accession number: Q8RR57
    Secondary accession number(s): Q5SMG1
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 23, 2003
    Last sequence update: June 1, 2002
    Last modified: October 1, 2014
    This is version 78 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3