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Entry version 61 (13 Apr 2016)
Sequence version 1 (01 Jun 2002)
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Protein

Submitted name:

Endo-1,4-beta-xylanase

Gene

xyl

Organism

Pseudoalteromonas haloplanktis (Alteromonas haloplanktis)

Status

Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein levelⁱ

Functionⁱ

Enzyme and pathway databases

BRENDAⁱ	3.2.1.8. 5081.

BRENDAⁱ

3.2.1.8. 5081.

Protein family/group databases

CAZyⁱ	GH8. Glycoside Hydrolase Family 8.

CAZyⁱ

GH8. Glycoside Hydrolase Family 8.

Names & Taxonomyⁱ

Protein namesⁱ	Submitted name: Endo-1,4-beta-xylanaseImported Automatic assertion inferred from database entriesⁱ EMBL:CAD20872.1 (EC:3.2.1.8Imported Automatic assertion inferred from database entriesⁱ EMBL:CAD20872.1 )
Gene namesⁱ	Name:xylImported Automatic assertion inferred from database entriesⁱ EMBL:CAD20872.1
Organismⁱ	Pseudoalteromonas haloplanktis (Alteromonas haloplanktis)Imported Automatic assertion inferred from database entriesⁱ EMBL:CAD20872.1
Taxonomic identifierⁱ	228 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Pseudoalteromonadaceae › Pseudoalteromonas

PTM / Processingⁱ

Molecule processing

Feature key	Position(s)	Length	Description	Graphical view	Feature identifier	Actions
Signal peptideⁱ	1 – 21	21	Sequence analysis Automatic assertion according to rulesⁱ SAM:SignalP			Add BLAST
Chainⁱ	22 – 426	405	Sequence analysis Automatic assertion according to rulesⁱ SAM:SignalP		PRO_5004314169	Add BLAST

Amino acid modifications

Feature key	Position(s)	Length	Description	Graphical view	Feature identifier	Actions
Disulfide bondⁱ	345 ↔ 360		Combined sources Automatic assertion inferred from combination of experimental and computational evidenceⁱ PDB:1H12 PDB:1H13 PDB:1H14

Structureⁱ

3D structure databases

Select the link destinations:
PDBeⁱ
RCSB PDBⁱ
PDBjⁱ

Links Updated

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1H12	X-ray	1.20	A	22-426	[»]
1H13	X-ray	1.30	A	22-426	[»]
1H14	X-ray	1.50	A	22-426	[»]
1XW2	X-ray	1.76	A	22-426	[»]
1XWQ	X-ray	1.88	A	22-426	[»]
1XWT	X-ray	1.30	A	22-426	[»]
2A8Z	X-ray	3.20	A	22-426	[»]
2B4F	X-ray	1.95	A	22-426	[»]

ProteinModelPortalⁱ

Q8RJN8.

SMRⁱ

Q8RJN8. Positions 22-424.

ModBaseⁱ

Search...

MobiDBⁱ

Search...

Miscellaneous databases

EvolutionaryTraceⁱ	Q8RJN8.

EvolutionaryTraceⁱ

Q8RJN8.

Family & Domainsⁱ

Keywords - Domainⁱ

SignalSequence analysis

Family and domain databases

Gene3Dⁱ	1.50.10.10. 1 hit.
InterProⁱ	IPR008928. 6-hairpin_glycosidase-like. IPR012341. 6hp_glycosidase. IPR002037. Glyco_hydro_8. [Graphical view]
Pfamⁱ	PF01270. Glyco_hydro_8. 1 hit. [Graphical view]
SUPFAMⁱ	SSF48208. SSF48208. 1 hit.

Sequenceⁱ

Sequence statusⁱ: Complete.

Sequence processingⁱ: The displayed sequence is further processed into a mature form.

Q8RJN8-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MKVFFKITTL LLILISYQSL AAFNNNPSSV GAYSSGTYRN LAQEMGKTNI 
        60         70         80         90        100
QQKVNSTFDN MFGYNNTQQL YYPYTENGVY KAHYIKAINP DEGDDIRTEG 
       110        120        130        140        150
QSWGMTAAVM LNKQEEFDNL WRFAKAYQKN PDNHPDAKKQ GVYAWKLKLN 
       160        170        180        190        200
QNGFVYKVDE GPAPDGEEYF AFALLNASAR WGNSGEFNYY NDAITMLNTI 
       210        220        230        240        250
KNKLMENQII RFSPYIDNLT DPSYHIPAFY DYFANNVTNQ ADKNYWRQVA 
       260        270        280        290        300
TKSRTLLKNH FTKVSGSPHW NLPTFLSRLD GSPVIGYIFN GQANPGQWYE 
       310        320        330        340        350
FDAWRVIMNV GLDAHLMGAQ AWHKSAVNKA LGFLSYAKTN NSKNCYEQVY 
       360        370        380        390        400
SYGGAQNRGC AGEGQKAANA VALLASTNAG QANEFFNEFW SLSQPTGDYR 
       410        420 
YYNGSLYMLA MLHVSGNFKF YNNTFN

Length:426

Mass (Da):48,407

Last modified:June 1, 2002 - v1

Checksum:ⁱ49F5D6C37AEB9F69

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AJ427921 Genomic DNA. Translation: CAD20872.1.

Select the link destinations:
EMBLⁱ
GenBankⁱ
DDBJⁱ

Links Updated

AJ427921 Genomic DNA. Translation: CAD20872.1.

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AJ427921 Genomic DNA. Translation: CAD20872.1.

Select the link destinations:
EMBLⁱ
GenBankⁱ
DDBJⁱ

Links Updated

AJ427921 Genomic DNA. Translation: CAD20872.1.

3D structure databases

Select the link destinations:
PDBeⁱ
RCSB PDBⁱ
PDBjⁱ

Links Updated

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1H12	X-ray	1.20	A	22-426	[»]
1H13	X-ray	1.30	A	22-426	[»]
1H14	X-ray	1.50	A	22-426	[»]
1XW2	X-ray	1.76	A	22-426	[»]
1XWQ	X-ray	1.88	A	22-426	[»]
1XWT	X-ray	1.30	A	22-426	[»]
2A8Z	X-ray	3.20	A	22-426	[»]
2B4F	X-ray	1.95	A	22-426	[»]

ProteinModelPortalⁱ

Q8RJN8.

SMRⁱ

Q8RJN8. Positions 22-424.

ModBaseⁱ

Search...

MobiDBⁱ

Search...

Protein family/group databases

CAZyⁱ	GH8. Glycoside Hydrolase Family 8.

CAZyⁱ

GH8. Glycoside Hydrolase Family 8.

Protocols and materials databases

Structural Biology Knowledgebase	Search...

Structural Biology Knowledgebase

Search...

Enzyme and pathway databases

BRENDAⁱ	3.2.1.8. 5081.

BRENDAⁱ

3.2.1.8. 5081.

Miscellaneous databases

EvolutionaryTraceⁱ	Q8RJN8.

EvolutionaryTraceⁱ

Q8RJN8.

Family and domain databases

Gene3Dⁱ	1.50.10.10. 1 hit.
InterProⁱ	IPR008928. 6-hairpin_glycosidase-like. IPR012341. 6hp_glycosidase. IPR002037. Glyco_hydro_8. [Graphical view]
Pfamⁱ	PF01270. Glyco_hydro_8. 1 hit. [Graphical view]
SUPFAMⁱ	SSF48208. SSF48208. 1 hit.
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ

Q8RJN8_PSEHA

Accessionⁱ

Primary (citable) accession number: Q8RJN8

Entry historyⁱ

Integrated into UniProtKB/TrEMBL:	June 1, 2002
Last sequence update:	June 1, 2002
Last modified:	April 13, 2016
This is version 61 of the entry and version 1 of the sequence. [Complete history]

Entry statusⁱ

Unreviewed (UniProtKB/TrEMBL)

Miscellaneousⁱ

Keywords - Technical termⁱ

3D-structureCombined sources

Similar proteinsⁱ

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:

100%	UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%	UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%	UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

UniProtKB - Q8RJN8 (Q8RJN8_PSEHA)

UniProt

Q8RJN8 - Q8RJN8_PSEHA

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Endo-1,4-beta-xylanase

xyl

Select a section on the left to see content.

Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Keywords - Molecular functionⁱ

Keywords - Biological processⁱ

Enzyme and pathway databases

Protein family/group databases

Names & Taxonomyⁱ

PTM / Processingⁱ

Molecule processing

Amino acid modifications

Structureⁱ

3D structure databases

Miscellaneous databases

Family & Domainsⁱ

Keywords - Domainⁱ

Family and domain databases

Sequenceⁱ

Sequence databases

Cross-referencesⁱ

Sequence databases

3D structure databases

Protein family/group databases

Protocols and materials databases

Enzyme and pathway databases

Miscellaneous databases

Family and domain databases

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ

Similar proteinsⁱ

UniProtKB

UniParc

Help

UniRef

Proteomes

Annotation systems

Supporting data

UniProtKB - Q8RJN8 (Q8RJN8_PSEHA)

UniProt

Q8RJN8 - Q8RJN8_PSEHA

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Endo-1,4-beta-xylanase

xyl

Select a section on the left to see content.

<p>Provides any useful information about the protein, mostly biological knowledge.</p><p><a href='../manual/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:</p><p><a href='../manual/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:</p><p><a href='../manual/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

Enzyme and pathway databases

Protein family/group databases

<p>Provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.</p><p><a href='../manual/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>Describes post-translational modifications (PTMs) and/or processing events.</p><p><a href='../manual/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Amino acid modifications

<p>Provides information on the tertiary and secondary structure of a protein.</p><p><a href='../manual/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Miscellaneous databases

<p>Provides information on sequence similarities with other proteins and the domain(s) present in a protein.</p><p><a href='../manual/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Family and domain databases

<p>Displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including length and molecular weight.</p><p><a href='../manual/sequences_section' target='_top'>More...</a></p>Sequencei

Sequence databases

<p>Is used to point to information related to entries and found in data collections other than UniProtKB.</p><p><a href='../manual/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protein family/group databases

Protocols and materials databases

Enzyme and pathway databases

Miscellaneous databases

Family and domain databases

<p>Provides general information on the entry.</p><p><a href='../manual/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>Contains any relevant information that doesn’t fit in any other defined sections</p><p><a href='../manual/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

PTM / Processingⁱ

Structureⁱ

Family & Domainsⁱ

Sequenceⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ