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Q8RDH4

- Q8RDH4_THETN

UniProt

Q8RDH4 - Q8RDH4_THETN

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Protein
Submitted name: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene
DppD, TTE0057
Organism
Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Caldanaerobacter subterraneus subsp. tengcongensis)
Status
Unreviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei14 – 141ATPImported
Metal bindingi48 – 481MagnesiumImported
Binding sitei61 – 611ATPImported
Metal bindingi97 – 971MagnesiumImported
Binding sitei97 – 971ATPImported
Metal bindingi179 – 1791MagnesiumImported
Metal bindingi248 – 2481Iron-sulfur (4Fe-4S); via tele nitrogenImported
Metal bindingi285 – 2851Iron-sulfur (4Fe-4S)Imported
Metal bindingi291 – 2911Iron-sulfur (4Fe-4S)Imported
Metal bindingi298 – 2981Iron-sulfur (4Fe-4S)Imported
Metal bindingi316 – 3161Iron-sulfur (4Fe-4S)Imported

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi44 – 496ATPImported

GO - Molecular functioni

  1. 4 iron, 4 sulfur cluster binding Source: UniProtKB-KW
  2. ATP binding Source: UniProtKB-KW
  3. ATPase activity Source: InterPro
  4. metal ion binding Source: UniProtKB-KW
  5. peptide transporter activity Source: InterPro
Complete GO annotation...

Keywords - Biological processi

TransportSAAS annotations

Keywords - Ligandi

4Fe-4SImported, ATP-bindingUniRule annotationSAAS annotationsImported, Iron, Iron-sulfur, MagnesiumImported, Metal-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase componentImported
Gene namesi
Name:DppDImported
Ordered Locus Names:TTE0057Imported
OrganismiThermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Caldanaerobacter subterraneus subsp. tengcongensis)Imported
Taxonomic identifieri273068 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacteraceaeCaldanaerobacter
ProteomesiUP000000555: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. membrane Source: InterPro
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi273068.TTE0057.

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4FWIX-ray2.89B1-326[»]
ProteinModelPortaliQ8RDH4.

Family & Domainsi

Sequence similaritiesi

Belongs to the ABC transporter superfamily.UniRule annotation
Contains ABC transporter domain.SAAS annotations

Phylogenomic databases

KOiK02031.
OMAiVACWLVE.
OrthoDBiEOG6T7N3V.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR010066. Oligo_ATP-bd_C.
IPR013563. Oligopep_ABC_C.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00005. ABC_tran. 1 hit.
PF08352. oligo_HPY. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR01727. oligo_HPY. 1 hit.
PROSITEiPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8RDH4-1 [UniParc]FASTAAdd to Basket

« Hide

MSIIIRVEDL RAVYLVREGT IKAADGISLD ILENSVTAIV GESASGKSTI    50
IEAMTKTLPP NGRILSGRVL YKGKDLLTMR EEELRKIRWK EIALVPQAAQ 100
QSLNPTMKVI EHFKDTVEAH GVRWSHSELI EKASEKLRMV RLNPEAVLNS 150
YPLQLSGGMK QRVLIALALL LDPVVLILDE PTSALDVLTQ AHIIQLLKEL 200
KKMLKITLIF VTHDIAVAAE LADKVAVIYG GNLVEYNSTF QIFKNPLHPY 250
TRGLINSIMA VNADMSKVKP IPGDPPSLLN PPSGCRFHPR CEYAMEICKK 300
EKPKWIRLDG EAHVACHLYE EGRPLK 326
Length:326
Mass (Da):36,361
Last modified:June 1, 2002 - v1
Checksum:iC3BAE78BDC12F15A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE008691 Genomic DNA. Translation: AAM23365.1.
RefSeqiNP_621761.1. NC_003869.1.

Genome annotation databases

EnsemblBacteriaiAAM23365; AAM23365; TTE0057.
GeneIDi998051.
KEGGitte:TTE0057.
PATRICi23894751. VBITheTen82880_0054.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE008691 Genomic DNA. Translation: AAM23365.1 .
RefSeqi NP_621761.1. NC_003869.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4FWI X-ray 2.89 B 1-326 [» ]
ProteinModelPortali Q8RDH4.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 273068.TTE0057.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAM23365 ; AAM23365 ; TTE0057 .
GeneIDi 998051.
KEGGi tte:TTE0057.
PATRICi 23894751. VBITheTen82880_0054.

Phylogenomic databases

KOi K02031.
OMAi VACWLVE.
OrthoDBi EOG6T7N3V.

Family and domain databases

Gene3Di 3.40.50.300. 1 hit.
InterProi IPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR010066. Oligo_ATP-bd_C.
IPR013563. Oligopep_ABC_C.
IPR027417. P-loop_NTPase.
[Graphical view ]
Pfami PF00005. ABC_tran. 1 hit.
PF08352. oligo_HPY. 1 hit.
[Graphical view ]
SMARTi SM00382. AAA. 1 hit.
[Graphical view ]
SUPFAMi SSF52540. SSF52540. 1 hit.
TIGRFAMsi TIGR01727. oligo_HPY. 1 hit.
PROSITEi PS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 15242 / JCM 11007 / NBRC 100824 / MB4.
  2. "Structure of the nucleotide-binding domain of a dipeptide ABC transporter reveals a novel iron-sulfur cluster-binding domain."
    Li X., Zhuo W., Yu J., Ge J., Gu J., Feng Y., Yang M., Wang L., Wang N.
    Acta Crystallogr. D 69:256-265(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.89 ANGSTROMS) IN COMPLEX WITH ATP; IRON-SULFUR (4FE-4S) AND MAGNESIUM.

Entry informationi

Entry nameiQ8RDH4_THETN
AccessioniPrimary (citable) accession number: Q8RDH4
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2002
Last sequence update: June 1, 2002
Last modified: June 11, 2014
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome

External Data

Dasty 3

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