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Protein
Submitted name:

ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene

DppD

Organism
Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei61ATPCombined sources1
Binding sitei97ATPCombined sources1
Metal bindingi248Iron-sulfur (4Fe-4S); via tele nitrogenCombined sources1
Metal bindingi249Iron-sulfur (4Fe-4S)Combined sources1
Metal bindingi285Iron-sulfur (4Fe-4S)Combined sources1
Metal bindingi291Iron-sulfur (4Fe-4S)Combined sources1
Metal bindingi298Iron-sulfur (4Fe-4S)Combined sources1
Metal bindingi316Iron-sulfur (4Fe-4S)Combined sources1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi14 – 17ATPCombined sources4
Nucleotide bindingi41 – 48ATPPROSITE-ProRule annotation8
Nucleotide bindingi44 – 49ATPCombined sources6

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processTransportSAAS annotation
Ligand4Fe-4SCombined sources, ATP-bindingPROSITE-ProRule annotationCombined sourcesSAAS annotation, Iron, Iron-sulfur, Metal-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase componentImported
Gene namesi
Name:DppDImported
Ordered Locus Names:TTE0057Imported
OrganismiCaldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis)Imported
Taxonomic identifieri273068 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacteraceaeCaldanaerobacter
Proteomesi
  • UP000000555 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi273068.TTE0057

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4FWIX-ray2.89B1-326[»]
ProteinModelPortaliQ8RDH4
SMRiQ8RDH4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 255ABC transporterInterPro annotationAdd BLAST251

Sequence similaritiesi

Belongs to the ABC transporter superfamily.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105C3U Bacteria
COG0444 LUCA
KOiK02031
OMAiAWREHKG
OrthoDBiPOG091H00S9

Family and domain databases

InterProiView protein in InterPro
IPR003593 AAA+_ATPase
IPR003439 ABC_transporter-like
IPR017871 ABC_transporter_CS
IPR013563 Oligopep_ABC_C
IPR027417 P-loop_NTPase
PfamiView protein in Pfam
PF00005 ABC_tran, 1 hit
PF08352 oligo_HPY, 1 hit
SMARTiView protein in SMART
SM00382 AAA, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
TIGRFAMsiTIGR01727 oligo_HPY, 1 hit
PROSITEiView protein in PROSITE
PS00211 ABC_TRANSPORTER_1, 1 hit
PS50893 ABC_TRANSPORTER_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q8RDH4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSIIIRVEDL RAVYLVREGT IKAADGISLD ILENSVTAIV GESASGKSTI
60 70 80 90 100
IEAMTKTLPP NGRILSGRVL YKGKDLLTMR EEELRKIRWK EIALVPQAAQ
110 120 130 140 150
QSLNPTMKVI EHFKDTVEAH GVRWSHSELI EKASEKLRMV RLNPEAVLNS
160 170 180 190 200
YPLQLSGGMK QRVLIALALL LDPVVLILDE PTSALDVLTQ AHIIQLLKEL
210 220 230 240 250
KKMLKITLIF VTHDIAVAAE LADKVAVIYG GNLVEYNSTF QIFKNPLHPY
260 270 280 290 300
TRGLINSIMA VNADMSKVKP IPGDPPSLLN PPSGCRFHPR CEYAMEICKK
310 320
EKPKWIRLDG EAHVACHLYE EGRPLK
Length:326
Mass (Da):36,361
Last modified:June 1, 2002 - v1
Checksum:iC3BAE78BDC12F15A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008691 Genomic DNA Translation: AAM23365.1
RefSeqiWP_009610546.1, NC_003869.1

Genome annotation databases

EnsemblBacteriaiAAM23365; AAM23365; TTE0057
KEGGitte:TTE0057

Similar proteinsi

Entry informationi

Entry nameiQ8RDH4_CALS4
AccessioniPrimary (citable) accession number: Q8RDH4
Entry historyiIntegrated into UniProtKB/TrEMBL: June 1, 2002
Last sequence update: June 1, 2002
Last modified: May 23, 2018
This is version 120 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

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