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Q8RDH4

- Q8RDH4_CALS4

UniProt

Q8RDH4 - Q8RDH4_CALS4

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Protein
Submitted name:

ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene

DppD

Organism
Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei14 – 141ATPImported
Metal bindingi48 – 481MagnesiumImported
Binding sitei61 – 611ATPImported
Metal bindingi97 – 971MagnesiumImported
Binding sitei97 – 971ATPImported
Metal bindingi179 – 1791MagnesiumImported
Metal bindingi248 – 2481Iron-sulfur(4Fe-4S); via tele nitrogenImported
Metal bindingi285 – 2851Iron-sulfur(4Fe-4S)Imported
Metal bindingi291 – 2911Iron-sulfur(4Fe-4S)Imported
Metal bindingi298 – 2981Iron-sulfur(4Fe-4S)Imported
Metal bindingi316 – 3161Iron-sulfur(4Fe-4S)Imported

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi44 – 496ATPImported

GO - Molecular functioni

  1. ATPase activity Source: InterPro
  2. ATP binding Source: UniProtKB-KW
  3. metal ion binding Source: UniProtKB-KW
  4. peptide transporter activity Source: InterPro
Complete GO annotation...

Keywords - Biological processi

TransportSAAS annotation

Keywords - Ligandi

ATP-bindingUniRule annotationSAAS annotation, MagnesiumImported, Metal-bindingImported, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase componentImported
Gene namesi
Name:DppDImported
Ordered Locus Names:TTE0057Imported
OrganismiCaldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis)Imported
Taxonomic identifieri273068 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacteraceaeCaldanaerobacter
ProteomesiUP000000555: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. membrane Source: InterPro
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi273068.TTE0057.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4FWIX-ray2.89B1-326[»]
ProteinModelPortaliQ8RDH4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ABC transporter superfamily.UniRule annotation
Contains ABC transporter domain.SAAS annotation

Phylogenomic databases

KOiK02031.
OMAiVACWLVE.
OrthoDBiEOG6T7N3V.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR010066. Oligo_ATP-bd_C.
IPR013563. Oligopep_ABC_C.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00005. ABC_tran. 1 hit.
PF08352. oligo_HPY. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR01727. oligo_HPY. 1 hit.
PROSITEiPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8RDH4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSIIIRVEDL RAVYLVREGT IKAADGISLD ILENSVTAIV GESASGKSTI
60 70 80 90 100
IEAMTKTLPP NGRILSGRVL YKGKDLLTMR EEELRKIRWK EIALVPQAAQ
110 120 130 140 150
QSLNPTMKVI EHFKDTVEAH GVRWSHSELI EKASEKLRMV RLNPEAVLNS
160 170 180 190 200
YPLQLSGGMK QRVLIALALL LDPVVLILDE PTSALDVLTQ AHIIQLLKEL
210 220 230 240 250
KKMLKITLIF VTHDIAVAAE LADKVAVIYG GNLVEYNSTF QIFKNPLHPY
260 270 280 290 300
TRGLINSIMA VNADMSKVKP IPGDPPSLLN PPSGCRFHPR CEYAMEICKK
310 320
EKPKWIRLDG EAHVACHLYE EGRPLK
Length:326
Mass (Da):36,361
Last modified:June 1, 2002 - v1
Checksum:iC3BAE78BDC12F15A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008691 Genomic DNA. Translation: AAM23365.1.
RefSeqiNP_621761.1. NC_003869.1.

Genome annotation databases

EnsemblBacteriaiAAM23365; AAM23365; TTE0057.
GeneIDi998051.
KEGGitte:TTE0057.
PATRICi23894751. VBITheTen82880_0054.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008691 Genomic DNA. Translation: AAM23365.1 .
RefSeqi NP_621761.1. NC_003869.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4FWI X-ray 2.89 B 1-326 [» ]
ProteinModelPortali Q8RDH4.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 273068.TTE0057.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAM23365 ; AAM23365 ; TTE0057 .
GeneIDi 998051.
KEGGi tte:TTE0057.
PATRICi 23894751. VBITheTen82880_0054.

Phylogenomic databases

KOi K02031.
OMAi VACWLVE.
OrthoDBi EOG6T7N3V.

Family and domain databases

Gene3Di 3.40.50.300. 1 hit.
InterProi IPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR010066. Oligo_ATP-bd_C.
IPR013563. Oligopep_ABC_C.
IPR027417. P-loop_NTPase.
[Graphical view ]
Pfami PF00005. ABC_tran. 1 hit.
PF08352. oligo_HPY. 1 hit.
[Graphical view ]
SMARTi SM00382. AAA. 1 hit.
[Graphical view ]
SUPFAMi SSF52540. SSF52540. 1 hit.
TIGRFAMsi TIGR01727. oligo_HPY. 1 hit.
PROSITEi PS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 15242 / JCM 11007 / NBRC 100824 / MB4Imported.
  2. "Structure of the nucleotide-binding domain of a dipeptide ABC transporter reveals a novel iron-sulfur cluster-binding domain."
    Li X., Zhuo W., Yu J., Ge J., Gu J., Feng Y., Yang M., Wang L., Wang N.
    Acta Crystallogr. D 69:256-265(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.89 ANGSTROMS) IN COMPLEX WITH ATP; IRON-SULFUR(4FE-4S) AND MAGNESIUM.

Entry informationi

Entry nameiQ8RDH4_CALS4
AccessioniPrimary (citable) accession number: Q8RDH4
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2002
Last sequence update: June 1, 2002
Last modified: November 26, 2014
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome, Reference proteomeImported

External Data

Dasty 3