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Protein
Submitted name:

ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene

DppD

Organism
Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei14 – 141ATPCombined sources
Metal bindingi48 – 481MagnesiumCombined sources
Binding sitei61 – 611ATPCombined sources
Metal bindingi97 – 971MagnesiumCombined sources
Binding sitei97 – 971ATPCombined sources
Metal bindingi179 – 1791MagnesiumCombined sources
Metal bindingi248 – 2481Iron-sulfur (4Fe-4S); via tele nitrogenCombined sources
Metal bindingi285 – 2851Iron-sulfur (4Fe-4S)Combined sources
Metal bindingi291 – 2911Iron-sulfur (4Fe-4S)Combined sources
Metal bindingi298 – 2981Iron-sulfur (4Fe-4S)Combined sources
Metal bindingi316 – 3161Iron-sulfur (4Fe-4S)Combined sources

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi44 – 496ATPCombined sources

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

TransportSAAS annotation

Keywords - Ligandi

4Fe-4SCombined sources, ATP-bindingUniRule annotationCombined sources, Iron, Iron-sulfur, MagnesiumCombined sources, Metal-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase componentImported
Gene namesi
Name:DppDImported
Ordered Locus Names:TTE0057Imported
OrganismiCaldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis)Imported
Taxonomic identifieri273068 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacteraceaeCaldanaerobacter
ProteomesiUP000000555 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi273068.TTE0057.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4FWIX-ray2.89B1-326[»]
ProteinModelPortaliQ8RDH4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ABC transporter superfamily.UniRule annotation
Contains ABC transporter domain.SAAS annotation

Phylogenomic databases

KOiK02031.
OrthoDBiEOG6T7N3V.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR010066. Oligo_ATP-bd_C.
IPR013563. Oligopep_ABC_C.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00005. ABC_tran. 1 hit.
PF08352. oligo_HPY. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR01727. oligo_HPY. 1 hit.
PROSITEiPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8RDH4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSIIIRVEDL RAVYLVREGT IKAADGISLD ILENSVTAIV GESASGKSTI
60 70 80 90 100
IEAMTKTLPP NGRILSGRVL YKGKDLLTMR EEELRKIRWK EIALVPQAAQ
110 120 130 140 150
QSLNPTMKVI EHFKDTVEAH GVRWSHSELI EKASEKLRMV RLNPEAVLNS
160 170 180 190 200
YPLQLSGGMK QRVLIALALL LDPVVLILDE PTSALDVLTQ AHIIQLLKEL
210 220 230 240 250
KKMLKITLIF VTHDIAVAAE LADKVAVIYG GNLVEYNSTF QIFKNPLHPY
260 270 280 290 300
TRGLINSIMA VNADMSKVKP IPGDPPSLLN PPSGCRFHPR CEYAMEICKK
310 320
EKPKWIRLDG EAHVACHLYE EGRPLK
Length:326
Mass (Da):36,361
Last modified:June 1, 2002 - v1
Checksum:iC3BAE78BDC12F15A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008691 Genomic DNA. Translation: AAM23365.1.
RefSeqiWP_009610546.1. NC_003869.1.

Genome annotation databases

EnsemblBacteriaiAAM23365; AAM23365; TTE0057.
KEGGitte:TTE0057.
PATRICi23894751. VBITheTen82880_0054.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008691 Genomic DNA. Translation: AAM23365.1.
RefSeqiWP_009610546.1. NC_003869.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4FWIX-ray2.89B1-326[»]
ProteinModelPortaliQ8RDH4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi273068.TTE0057.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAM23365; AAM23365; TTE0057.
KEGGitte:TTE0057.
PATRICi23894751. VBITheTen82880_0054.

Phylogenomic databases

KOiK02031.
OrthoDBiEOG6T7N3V.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR010066. Oligo_ATP-bd_C.
IPR013563. Oligopep_ABC_C.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00005. ABC_tran. 1 hit.
PF08352. oligo_HPY. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR01727. oligo_HPY. 1 hit.
PROSITEiPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 15242 / JCM 11007 / NBRC 100824 / MB4Imported.
  2. "Structure of the nucleotide-binding domain of a dipeptide ABC transporter reveals a novel iron-sulfur cluster-binding domain."
    Li X., Zhuo W., Yu J., Ge J., Gu J., Feng Y., Yang M., Wang L., Wang N.
    Acta Crystallogr. D 69:256-265(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.89 ANGSTROMS) IN COMPLEX WITH ATP; IRON-SULFUR (4FE-4S) AND MAGNESIUM.

Entry informationi

Entry nameiQ8RDH4_CALS4
AccessioniPrimary (citable) accession number: Q8RDH4
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2002
Last sequence update: June 1, 2002
Last modified: July 22, 2015
This is version 98 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.