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Q8R490

- Q8R490_RAT

UniProt

Q8R490 - Q8R490_RAT

Protein
Submitted name:

Cadherin 13

Gene

Cdh13

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 91 (01 Oct 2014)
      Sequence version 1 (01 Jun 2002)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. calcium ion binding Source: InterPro

    GO - Biological processi

    1. cell adhesion Source: RGD
    2. homophilic cell adhesion Source: InterPro
    3. mitotic cell cycle Source: RGD
    4. regulation of cell growth Source: RGD
    5. response to organic substance Source: RGD
    6. single organismal cell-cell adhesion Source: RGD

    Keywords - Biological processi

    Cell adhesionSAAS annotation

    Keywords - Ligandi

    CalciumUniRule annotationSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Cadherin 13Imported
    Submitted name:
    T-cadherinImported
    Gene namesi
    Name:Cdh13Imported
    ORF Names:rCG_51389Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

    Organism-specific databases

    RGDi619745. Cdh13.

    Subcellular locationi

    GO - Cellular componenti

    1. perinuclear region of cytoplasm Source: RGD
    2. plasma membrane Source: RGD

    Keywords - Cellular componenti

    MembraneSAAS annotation

    Expressioni

    Gene expression databases

    GenevestigatoriQ8R490.

    Family & Domainsi

    Keywords - Domaini

    RepeatSAAS annotation

    Phylogenomic databases

    eggNOGiNOG304703.
    HOGENOMiHOG000231254.
    HOVERGENiHBG106438.
    InParanoidiQ8R490.
    KOiK06808.

    Family and domain databases

    Gene3Di2.60.40.60. 6 hits.
    InterProiIPR002126. Cadherin.
    IPR015919. Cadherin-like.
    IPR020894. Cadherin_CS.
    IPR014868. Cadherin_pro_dom.
    [Graphical view]
    PfamiPF00028. Cadherin. 5 hits.
    PF08758. Cadherin_pro. 1 hit.
    [Graphical view]
    PRINTSiPR00205. CADHERIN.
    SMARTiSM00112. CA. 5 hits.
    SM01055. Cadherin_pro. 1 hit.
    [Graphical view]
    SUPFAMiSSF49313. SSF49313. 6 hits.
    PROSITEiPS00232. CADHERIN_1. 3 hits.
    PS50268. CADHERIN_2. 5 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q8R490-1 [UniParc]FASTAAdd to Basket

    « Hide

    MQPRTPLTLC VLLSQVLLVT SAGDLDCTPG FQQKVLHIHQ PAEFIEDQPV    50
    LNLTFSDCKG NKKLHYEVSS PYFKVNSDGT LVAVRNITAV GRTLFVHART 100
    PHAEDMAELV IVGGKDIQGS LQDIFKFART SPVPRQKRSI VVSPILIPEN 150
    QRQPFPRDVG KVVDSDRPEG SKFRLTGKGV DQDPKGTFRI NENTGSVSVT 200
    RTLDRETIAT YQLFVETTDA SGRTLEGPVP LEVIVIDQND NRPIFREGPY 250
    IGHVMEGSPT GTTVMRMTAF DADDPATDNA LLRYNIRQQT PDKPSPNMFY 300
    IDPEKGDIVT VVSPALLDRE TLENPKYELI IEAQDMAGLD VGLTGTATAT 350
    IVIDDKNDHS PKFTKKEFQA TVEEGAVGVI VNLTVEDKDD PATGAWRAAY 400
    TIINGNPGQS FEIHTNPQTN EGMLSVVKPL DYEISAFHTL LIKVENEDPL 450
    VPDVSYGPSS TATVHITVLD VNEGPVFYPD PMMVTKQENI SVGSVLLTVN 500
    ATDPDSLQHQ TIRYSVYKDP AGWLSINPIN GTVDTTAVLD RESPFVHNSV 550
    YTALFLAIDS GNPPATGTGT LMITLEDVND NAPVIYPTVA EVCDDARNLS 600
    VVILGASDKD LHPNTDPFKF EIHKQTVPDK VWKISKINNT HALVSLLQNL 650
    NKANYNLPIM VTDSGKPPMT NITDLRVQVC SCKNSKVDCN AAGTLHLSLS 700
    LLLLFSLLSL LSGL 714
    Length:714
    Mass (Da):78,086
    Last modified:June 1, 2002 - v1
    Checksum:i7E56142B8162F864
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC085699 mRNA. Translation: AAH85699.1.
    AF494095 mRNA. Translation: AAM14607.1.
    CH473972 Genomic DNA. Translation: EDL92658.1.
    RefSeqiNP_620244.1. NM_138889.2.
    UniGeneiRn.23806.

    Genome annotation databases

    GeneIDi192248.
    KEGGirno:192248.
    UCSCiRGD:619745. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC085699 mRNA. Translation: AAH85699.1 .
    AF494095 mRNA. Translation: AAM14607.1 .
    CH473972 Genomic DNA. Translation: EDL92658.1 .
    RefSeqi NP_620244.1. NM_138889.2.
    UniGenei Rn.23806.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 192248.
    KEGGi rno:192248.
    UCSCi RGD:619745. rat.

    Organism-specific databases

    CTDi 1012.
    RGDi 619745. Cdh13.

    Phylogenomic databases

    eggNOGi NOG304703.
    HOGENOMi HOG000231254.
    HOVERGENi HBG106438.
    InParanoidi Q8R490.
    KOi K06808.

    Miscellaneous databases

    NextBioi 622888.

    Gene expression databases

    Genevestigatori Q8R490.

    Family and domain databases

    Gene3Di 2.60.40.60. 6 hits.
    InterProi IPR002126. Cadherin.
    IPR015919. Cadherin-like.
    IPR020894. Cadherin_CS.
    IPR014868. Cadherin_pro_dom.
    [Graphical view ]
    Pfami PF00028. Cadherin. 5 hits.
    PF08758. Cadherin_pro. 1 hit.
    [Graphical view ]
    PRINTSi PR00205. CADHERIN.
    SMARTi SM00112. CA. 5 hits.
    SM01055. Cadherin_pro. 1 hit.
    [Graphical view ]
    SUPFAMi SSF49313. SSF49313. 6 hits.
    PROSITEi PS00232. CADHERIN_1. 3 hits.
    PS50268. CADHERIN_2. 5 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Cloning of rat T-cadherin."
      Niermann T., Schmutz S.
      Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Tissue: HeartImported.
    2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
      , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: KidneyImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    4. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.

    Entry informationi

    Entry nameiQ8R490_RAT
    AccessioniPrimary (citable) accession number: Q8R490
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 1, 2002
    Last sequence update: June 1, 2002
    Last modified: October 1, 2014
    This is version 91 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)