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Q8R490 (Q8R490_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 80. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Cadherin 13 EMBL AAH85699.1
Submitted name:
T-cadherin EMBL AAM14607.1
Gene names
Name:Cdh13 RGD 619745 EMBL EDL92658.1
ORF Names:rCG_51389 EMBL EDL92658.1
OrganismRattus norvegicus (Rat) EMBL AAM14607.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length714 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q8R490 [UniParc].

Last modified June 1, 2002. Version 1.
Checksum: 7E56142B8162F864

FASTA71478,086
        10         20         30         40         50         60 
MQPRTPLTLC VLLSQVLLVT SAGDLDCTPG FQQKVLHIHQ PAEFIEDQPV LNLTFSDCKG 

        70         80         90        100        110        120 
NKKLHYEVSS PYFKVNSDGT LVAVRNITAV GRTLFVHART PHAEDMAELV IVGGKDIQGS 

       130        140        150        160        170        180 
LQDIFKFART SPVPRQKRSI VVSPILIPEN QRQPFPRDVG KVVDSDRPEG SKFRLTGKGV 

       190        200        210        220        230        240 
DQDPKGTFRI NENTGSVSVT RTLDRETIAT YQLFVETTDA SGRTLEGPVP LEVIVIDQND 

       250        260        270        280        290        300 
NRPIFREGPY IGHVMEGSPT GTTVMRMTAF DADDPATDNA LLRYNIRQQT PDKPSPNMFY 

       310        320        330        340        350        360 
IDPEKGDIVT VVSPALLDRE TLENPKYELI IEAQDMAGLD VGLTGTATAT IVIDDKNDHS 

       370        380        390        400        410        420 
PKFTKKEFQA TVEEGAVGVI VNLTVEDKDD PATGAWRAAY TIINGNPGQS FEIHTNPQTN 

       430        440        450        460        470        480 
EGMLSVVKPL DYEISAFHTL LIKVENEDPL VPDVSYGPSS TATVHITVLD VNEGPVFYPD 

       490        500        510        520        530        540 
PMMVTKQENI SVGSVLLTVN ATDPDSLQHQ TIRYSVYKDP AGWLSINPIN GTVDTTAVLD 

       550        560        570        580        590        600 
RESPFVHNSV YTALFLAIDS GNPPATGTGT LMITLEDVND NAPVIYPTVA EVCDDARNLS 

       610        620        630        640        650        660 
VVILGASDKD LHPNTDPFKF EIHKQTVPDK VWKISKINNT HALVSLLQNL NKANYNLPIM 

       670        680        690        700        710 
VTDSGKPPMT NITDLRVQVC SCKNSKVDCN AAGTLHLSLS LLLLFSLLSL LSGL

« Hide

References

« Hide 'large scale' references
[1]"Cloning of rat T-cadherin."
Niermann T., Schmutz S.
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Heart EMBL AAM14607.1.
[2]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Kidney EMBL AAH85699.1.
[3]"Gene and alternative splicing annotation with AIR."
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G.
Genome Res. 15:54-66(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDL92658.1.
[4]Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. expand/collapse author list , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDL92658.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BC085699 mRNA. Translation: AAH85699.1.
AF494095 mRNA. Translation: AAM14607.1.
CH473972 Genomic DNA. Translation: EDL92658.1.
IPIIPI00200257.
RefSeqNP_620244.1. NM_138889.2.
UniGeneRn.23806.

3D structure databases

HSSPHSSP built from PDB template 1NCJ based on UniProtKB P15116.
SMRQ8R490. Positions 139-243.
ModBaseSearch...

Protein-protein interaction databases

IntActQ8R490. 1 interaction.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID192248.
KEGGrno:192248.
UCSCRGD:619745. rat.

Organism-specific databases

CTD1012.
RGD619745. Cdh13.

Phylogenomic databases

eggNOGNOG304703.
HOGENOMHOG000231254.
HOVERGENHBG106438.
InParanoidQ8R490.
KOK06808.
OrthoDBEOG498V07.

Gene expression databases

GenevestigatorQ8R490.

Family and domain databases

Gene3D2.60.40.60. 6 hits.
InterProIPR002126. Cadherin.
IPR015919. Cadherin-like.
IPR020894. Cadherin_CS.
IPR014868. Cadherin_pro_dom.
[Graphical view]
PfamPF00028. Cadherin. 5 hits.
PF08758. Cadherin_pro. 1 hit.
[Graphical view]
PRINTSPR00205. CADHERIN.
SMARTSM00112. CA. 5 hits.
SM01055. Cadherin_pro. 1 hit.
[Graphical view]
SUPFAMSSF49313. Cadherin. 6 hits.
PROSITEPS00232. CADHERIN_1. 3 hits.
PS50268. CADHERIN_2. 5 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio622888.

Entry information

Entry nameQ8R490_RAT
AccessionPrimary (citable) accession number: Q8R490
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2002
Last sequence update: June 1, 2002
Last modified: April 3, 2013
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info