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Protein
Submitted name:

Cadherin 13

Gene

Cdh13

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandCalciumSAAS annotation

Enzyme and pathway databases

ReactomeiR-RNO-418990. Adherens junctions interactions.

Names & Taxonomyi

Protein namesi
Submitted name:
Cadherin 13Imported
Submitted name:
T-cadherinImported
Gene namesi
Name:Cdh13Imported
ORF Names:rCG_51389Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 19

Organism-specific databases

RGDi619745. Cdh13.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

MembraneSAAS annotation

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 21Sequence analysisAdd BLAST21
ChainiPRO_501121172322 – 714Sequence analysisAdd BLAST693

Expressioni

Gene expression databases

BgeeiENSRNOG00000014371.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000019298.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini26 – 112Cadherin_proInterPro annotationAdd BLAST87
Domaini160 – 243CAInterPro annotationAdd BLAST84
Domaini267 – 361CAInterPro annotationAdd BLAST95
Domaini383 – 476CAInterPro annotationAdd BLAST94
Domaini499 – 583CAInterPro annotationAdd BLAST85
Domaini604 – 687CAInterPro annotationAdd BLAST84

Keywords - Domaini

RepeatSAAS annotation, SignalSequence analysis

Phylogenomic databases

eggNOGiKOG3594. Eukaryota.
ENOG410XQHI. LUCA.
GeneTreeiENSGT00760000118906.
HOGENOMiHOG000231254.
HOVERGENiHBG106438.
KOiK06808.
OMAiKANYHLP.
OrthoDBiEOG091G02OG.

Family and domain databases

InterProiView protein in InterPro
IPR002126. Cadherin.
IPR015919. Cadherin-like.
IPR020894. Cadherin_CS.
IPR014868. Cadherin_pro_dom.
IPR033216. CDH13.
PANTHERiPTHR24027:SF80. PTHR24027:SF80. 1 hit.
PfamiView protein in Pfam
PF00028. Cadherin. 5 hits.
PF08758. Cadherin_pro. 1 hit.
PRINTSiPR00205. CADHERIN.
SMARTiView protein in SMART
SM00112. CA. 5 hits.
SM01055. Cadherin_pro. 1 hit.
SUPFAMiSSF49313. SSF49313. 6 hits.
PROSITEiView protein in PROSITE
PS00232. CADHERIN_1. 2 hits.

Sequencei

Sequence statusi: Complete.

Q8R490-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQPRTPLTLC VLLSQVLLVT SAGDLDCTPG FQQKVLHIHQ PAEFIEDQPV
60 70 80 90 100
LNLTFSDCKG NKKLHYEVSS PYFKVNSDGT LVAVRNITAV GRTLFVHART
110 120 130 140 150
PHAEDMAELV IVGGKDIQGS LQDIFKFART SPVPRQKRSI VVSPILIPEN
160 170 180 190 200
QRQPFPRDVG KVVDSDRPEG SKFRLTGKGV DQDPKGTFRI NENTGSVSVT
210 220 230 240 250
RTLDRETIAT YQLFVETTDA SGRTLEGPVP LEVIVIDQND NRPIFREGPY
260 270 280 290 300
IGHVMEGSPT GTTVMRMTAF DADDPATDNA LLRYNIRQQT PDKPSPNMFY
310 320 330 340 350
IDPEKGDIVT VVSPALLDRE TLENPKYELI IEAQDMAGLD VGLTGTATAT
360 370 380 390 400
IVIDDKNDHS PKFTKKEFQA TVEEGAVGVI VNLTVEDKDD PATGAWRAAY
410 420 430 440 450
TIINGNPGQS FEIHTNPQTN EGMLSVVKPL DYEISAFHTL LIKVENEDPL
460 470 480 490 500
VPDVSYGPSS TATVHITVLD VNEGPVFYPD PMMVTKQENI SVGSVLLTVN
510 520 530 540 550
ATDPDSLQHQ TIRYSVYKDP AGWLSINPIN GTVDTTAVLD RESPFVHNSV
560 570 580 590 600
YTALFLAIDS GNPPATGTGT LMITLEDVND NAPVIYPTVA EVCDDARNLS
610 620 630 640 650
VVILGASDKD LHPNTDPFKF EIHKQTVPDK VWKISKINNT HALVSLLQNL
660 670 680 690 700
NKANYNLPIM VTDSGKPPMT NITDLRVQVC SCKNSKVDCN AAGTLHLSLS
710
LLLLFSLLSL LSGL
Length:714
Mass (Da):78,086
Last modified:June 1, 2002 - v1
Checksum:i7E56142B8162F864
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07043979 Genomic DNA. No translation available.
AABR07043980 Genomic DNA. No translation available.
AABR07043981 Genomic DNA. No translation available.
AABR07043982 Genomic DNA. No translation available.
AABR07043983 Genomic DNA. No translation available.
AABR07043984 Genomic DNA. No translation available.
AABR07043985 Genomic DNA. No translation available.
AABR07043986 Genomic DNA. No translation available.
AABR07043987 Genomic DNA. No translation available.
AABR07043988 Genomic DNA. No translation available.
BC085699 mRNA. Translation: AAH85699.1.
AF494095 mRNA. Translation: AAM14607.1.
CH473972 Genomic DNA. Translation: EDL92658.1.
RefSeqiNP_620244.1. NM_138889.2.
UniGeneiRn.23806.

Genome annotation databases

EnsembliENSRNOT00000077053; ENSRNOP00000068368; ENSRNOG00000014371.
GeneIDi192248.
KEGGirno:192248.
UCSCiRGD:619745. rat.

Similar proteinsi

Entry informationi

Entry nameiQ8R490_RAT
AccessioniPrimary (citable) accession number: Q8R490
Entry historyiIntegrated into UniProtKB/TrEMBL: June 1, 2002
Last sequence update: June 1, 2002
Last modified: November 22, 2017
This is version 127 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported