ID STPAP_MOUSE Reviewed; 869 AA. AC Q8R3F9; Q3UUH3; DT 31-OCT-2006, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2002, sequence version 1. DT 27-MAR-2024, entry version 148. DE RecName: Full=Speckle targeted PIP5K1A-regulated poly(A) polymerase; DE Short=Star-PAP; DE EC=2.7.7.19 {ECO:0000250|UniProtKB:Q9H6E5}; DE AltName: Full=RNA-binding motif protein 21; DE Short=RNA-binding protein 21; DE AltName: Full=U6 snRNA-specific terminal uridylyltransferase 1; DE Short=U6-TUTase; DE EC=2.7.7.52 {ECO:0000250|UniProtKB:Q9H6E5}; GN Name=Tut1; Synonyms=Rbm21; OS Mus musculus (Mouse). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. OX NCBI_TaxID=10090; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). RC STRAIN=C57BL/6J; TISSUE=Hypothalamus; RX PubMed=16141072; DOI=10.1126/science.1112014; RA Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., RA Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., RA Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J., RA Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., RA Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., RA Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., RA Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., RA Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., RA Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., RA Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., RA Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., RA Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., RA Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., RA Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., RA Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., RA Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., RA Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., RA Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., RA Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., RA Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., RA Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., RA Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., RA Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., RA Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., RA Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., RA van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., RA Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., RA Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., RA Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., RA Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., RA Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., RA Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., RA Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., RA Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.; RT "The transcriptional landscape of the mammalian genome."; RL Science 309:1559-1563(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). RC STRAIN=FVB/N; TISSUE=Mammary tumor; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [3] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Embryonic fibroblast; RX PubMed=17525332; DOI=10.1126/science.1140321; RA Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III, Hurov K.E., RA Luo J., Bakalarski C.E., Zhao Z., Solimini N., Lerenthal Y., Shiloh Y., RA Gygi S.P., Elledge S.J.; RT "ATM and ATR substrate analysis reveals extensive protein networks RT responsive to DNA damage."; RL Science 316:1160-1166(2007). RN [4] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-688, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Liver, Spleen, and Testis; RX PubMed=21183079; DOI=10.1016/j.cell.2010.12.001; RA Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R., RA Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.; RT "A tissue-specific atlas of mouse protein phosphorylation and expression."; RL Cell 143:1174-1189(2010). CC -!- FUNCTION: Poly(A) polymerase that creates the 3'-poly(A) tail of CC specific pre-mRNAs. Localizes to nuclear speckles together with PIP5K1A CC and mediates polyadenylation of a select set of mRNAs, such as HMOX1. CC In addition to polyadenylation, it is also required for the 3'-end CC cleavage of pre-mRNAs: binds to the 3'UTR of targeted pre-mRNAs and CC promotes the recruitment and assembly of the CPSF complex on the 3'UTR CC of pre-mRNAs. In addition to adenylyltransferase activity, also has CC uridylyltransferase activity. However, the ATP ratio is higher than UTP CC in cells, suggesting that it functions primarily as a poly(A) CC polymerase. Acts as a specific terminal uridylyltransferase for U6 CC snRNA in vitro: responsible for a controlled elongation reaction that CC results in the restoration of the four 3'-terminal UMP-residues found CC in newly transcribed U6 snRNA. Not involved in replication-dependent CC histone mRNA degradation. {ECO:0000250|UniProtKB:Q9H6E5}. CC -!- CATALYTIC ACTIVITY: CC Reaction=RNA(n) + UTP = diphosphate + RNA(n)-3'-uridine ribonucleotide; CC Xref=Rhea:RHEA:14785, Rhea:RHEA-COMP:14527, Rhea:RHEA-COMP:17348, CC ChEBI:CHEBI:33019, ChEBI:CHEBI:46398, ChEBI:CHEBI:140395, CC ChEBI:CHEBI:173116; EC=2.7.7.52; CC Evidence={ECO:0000250|UniProtKB:Q9H6E5}; CC -!- CATALYTIC ACTIVITY: CC Reaction=ATP + RNA(n) = diphosphate + RNA(n)-3'-adenine ribonucleotide; CC Xref=Rhea:RHEA:11332, Rhea:RHEA-COMP:14527, Rhea:RHEA-COMP:17347, CC ChEBI:CHEBI:30616, ChEBI:CHEBI:33019, ChEBI:CHEBI:140395, CC ChEBI:CHEBI:173115; EC=2.7.7.19; CC Evidence={ECO:0000250|UniProtKB:Q9H6E5}; CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Evidence={ECO:0000250|UniProtKB:Q9H6E5}; CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Evidence={ECO:0000250|UniProtKB:Q9NVV4}; CC Note=Binds 1 divalent cation per subunit. CC {ECO:0000250|UniProtKB:Q9H6E5}; CC -!- ACTIVITY REGULATION: Adenylyltransferase activity is specifically CC phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2). CC {ECO:0000250|UniProtKB:Q9H6E5}. CC -!- SUBUNIT: Associates with the cleavage and polyadenylation specificity CC factor (CPSF) complex. Interacts with CPSF1 and CPSF3; the interaction CC is direct. Interacts with PIP5K1A. {ECO:0000250|UniProtKB:Q9H6E5}. CC -!- SUBCELLULAR LOCATION: Nucleus, nucleolus CC {ECO:0000250|UniProtKB:Q9H6E5}. Nucleus speckle CC {ECO:0000250|UniProtKB:Q9H6E5}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q8R3F9-1; Sequence=Displayed; CC Name=2; CC IsoId=Q8R3F9-2; Sequence=VSP_021201, VSP_021202; CC -!- DOMAIN: The zinc-finger domain is required for terminal CC uridylyltransferase activity. Together with the RRM domain, binds the CC 5'-area of U6 snRNA. {ECO:0000250|UniProtKB:Q9H6E5}. CC -!- DOMAIN: The RRM domain is required for terminal uridylyltransferase CC activity. Together with the zinc-finger domain, binds the 5'-area of U6 CC snRNA. {ECO:0000250|UniProtKB:Q9H6E5}. CC -!- DOMAIN: The proline-rich region is dispensable for terminal CC uridylyltransferase activity. {ECO:0000250|UniProtKB:Q9H6E5}. CC -!- PTM: Phosphorylated by CK1 in the proline-rich (Pro-rich) region. CC {ECO:0000250|UniProtKB:Q9H6E5}. CC -!- SIMILARITY: Belongs to the DNA polymerase type-B-like family. CC {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AK138418; BAE23652.1; -; mRNA. DR EMBL; BC023900; AAH23900.1; -; mRNA. DR EMBL; BC025499; AAH25499.1; -; mRNA. DR CCDS; CCDS29562.1; -. [Q8R3F9-1] DR RefSeq; NP_932110.1; NM_197993.3. [Q8R3F9-1] DR AlphaFoldDB; Q8R3F9; -. DR SMR; Q8R3F9; -. DR BioGRID; 213834; 4. DR STRING; 10090.ENSMUSP00000093958; -. DR iPTMnet; Q8R3F9; -. DR PhosphoSitePlus; Q8R3F9; -. DR SwissPalm; Q8R3F9; -. DR EPD; Q8R3F9; -. DR jPOST; Q8R3F9; -. DR MaxQB; Q8R3F9; -. DR PaxDb; 10090-ENSMUSP00000093958; -. DR PeptideAtlas; Q8R3F9; -. DR ProteomicsDB; 257462; -. [Q8R3F9-1] DR ProteomicsDB; 257463; -. [Q8R3F9-2] DR Pumba; Q8R3F9; -. DR Ensembl; ENSMUST00000096239.7; ENSMUSP00000093958.6; ENSMUSG00000071645.7. [Q8R3F9-1] DR GeneID; 70044; -. DR KEGG; mmu:70044; -. DR UCSC; uc008gog.1; mouse. [Q8R3F9-2] DR UCSC; uc008goh.1; mouse. [Q8R3F9-1] DR AGR; MGI:1917294; -. DR CTD; 64852; -. DR MGI; MGI:1917294; Tut1. DR VEuPathDB; HostDB:ENSMUSG00000071645; -. DR eggNOG; KOG2277; Eukaryota. DR GeneTree; ENSGT00940000159914; -. DR HOGENOM; CLU_018757_1_0_1; -. DR InParanoid; Q8R3F9; -. DR OMA; KSCEEGR; -. DR OrthoDB; 170176at2759; -. DR PhylomeDB; Q8R3F9; -. DR TreeFam; TF354308; -. DR BioGRID-ORCS; 70044; 24 hits in 76 CRISPR screens. DR ChiTaRS; Tut1; mouse. DR PRO; PR:Q8R3F9; -. DR Proteomes; UP000000589; Chromosome 19. DR RNAct; Q8R3F9; Protein. DR Bgee; ENSMUSG00000071645; Expressed in ear vesicle and 169 other cell types or tissues. DR GO; GO:0005829; C:cytosol; ISO:MGI. DR GO; GO:0005739; C:mitochondrion; IBA:GO_Central. DR GO; GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; ISS:UniProtKB. DR GO; GO:0016607; C:nuclear speck; ISS:UniProtKB. DR GO; GO:0005730; C:nucleolus; ISS:UniProtKB. DR GO; GO:0005654; C:nucleoplasm; ISO:MGI. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0019899; F:enzyme binding; ISO:MGI. DR GO; GO:0140767; F:enzyme-substrate adaptor activity; ISS:UniProtKB. DR GO; GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB. DR GO; GO:1990817; F:poly(A) RNA polymerase activity; ISS:UniProtKB. DR GO; GO:0003723; F:RNA binding; ISS:UniProtKB. DR GO; GO:0050265; F:RNA uridylyltransferase activity; ISS:UniProtKB. DR GO; GO:0017070; F:U6 snRNA binding; ISS:UniProtKB. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0180010; P:co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway; ISS:UniProtKB. DR GO; GO:0006378; P:mRNA polyadenylation; ISO:MGI. DR GO; GO:0016180; P:snRNA processing; ISS:UniProtKB. DR GO; GO:0034477; P:U6 snRNA 3'-end processing; ISS:UniProtKB. DR CDD; cd05402; NT_PAP_TUTase; 1. DR CDD; cd12279; RRM_TUT1; 1. DR Gene3D; 1.10.1410.10; -; 1. DR Gene3D; 3.30.70.330; -; 1. DR Gene3D; 3.30.460.10; Beta Polymerase, domain 2; 2. DR InterPro; IPR003604; Matrin/U1-like-C_Znf_C2H2. DR InterPro; IPR043519; NT_sf. DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf. DR InterPro; IPR002058; PAP_assoc. DR InterPro; IPR035979; RBD_domain_sf. DR InterPro; IPR000504; RRM_dom. DR InterPro; IPR034388; Star-PAP_RRM. DR InterPro; IPR036236; Znf_C2H2_sf. DR InterPro; IPR013087; Znf_C2H2_type. DR PANTHER; PTHR12271; POLY A POLYMERASE CID PAP -RELATED; 1. DR PANTHER; PTHR12271:SF127; SPECKLE TARGETED PIP5K1A-REGULATED POLY(A) POLYMERASE; 1. DR Pfam; PF03828; PAP_assoc; 1. DR Pfam; PF00076; RRM_1; 1. DR Pfam; PF12874; zf-met; 1. DR SMART; SM00360; RRM; 1. DR SMART; SM00451; ZnF_U1; 1. DR SUPFAM; SSF57667; beta-beta-alpha zinc fingers; 1. DR SUPFAM; SSF81301; Nucleotidyltransferase; 1. DR SUPFAM; SSF81631; PAP/OAS1 substrate-binding domain; 1. DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1. DR PROSITE; PS50102; RRM; 1. DR Genevisible; Q8R3F9; MM. PE 1: Evidence at protein level; KW Alternative splicing; ATP-binding; Magnesium; Manganese; Metal-binding; KW mRNA processing; Nucleotide-binding; Nucleotidyltransferase; Nucleus; KW Phosphoprotein; Reference proteome; RNA-binding; Transferase; Zinc; KW Zinc-finger. FT CHAIN 1..869 FT /note="Speckle targeted PIP5K1A-regulated poly(A) FT polymerase" FT /id="PRO_0000254187" FT DOMAIN 56..128 FT /note="RRM" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00176" FT DOMAIN 494..552 FT /note="PAP-associated" FT /evidence="ECO:0000255" FT ZN_FING 16..46 FT /note="Matrin-type" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00130" FT REGION 114..144 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 226..247 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 259..335 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 601..869 FT /note="KA1; binds the bulging loops of U6 snRNA but is FT dispensable for terminal uridylyltransferase activity" FT /evidence="ECO:0000250|UniProtKB:Q9H6E5" FT REGION 640..689 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 735..757 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 775..796 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 803..822 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 262..310 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 314..335 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 667..689 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT BINDING 205 FT /ligand="ATP" FT /ligand_id="ChEBI:CHEBI:30616" FT /evidence="ECO:0000250|UniProtKB:Q9H6E5" FT BINDING 216 FT /ligand="Mg(2+)" FT /ligand_id="ChEBI:CHEBI:18420" FT /ligand_note="catalytic" FT /evidence="ECO:0000250|UniProtKB:Q9H6E5" FT BINDING 216 FT /ligand="UTP" FT /ligand_id="ChEBI:CHEBI:46398" FT /evidence="ECO:0000250|UniProtKB:Q9H6E5" FT BINDING 218 FT /ligand="Mg(2+)" FT /ligand_id="ChEBI:CHEBI:18420" FT /ligand_note="catalytic" FT /evidence="ECO:0000250|UniProtKB:Q9H6E5" FT BINDING 218 FT /ligand="UTP" FT /ligand_id="ChEBI:CHEBI:46398" FT /evidence="ECO:0000250|UniProtKB:Q9H6E5" FT BINDING 395 FT /ligand="ATP" FT /ligand_id="ChEBI:CHEBI:30616" FT /evidence="ECO:0000250|UniProtKB:Q9H6E5" FT BINDING 395 FT /ligand="UTP" FT /ligand_id="ChEBI:CHEBI:46398" FT /evidence="ECO:0000250|UniProtKB:Q9H6E5" FT BINDING 417 FT /ligand="UTP" FT /ligand_id="ChEBI:CHEBI:46398" FT /evidence="ECO:0000250|UniProtKB:Q9H6E5" FT BINDING 435 FT /ligand="UTP" FT /ligand_id="ChEBI:CHEBI:46398" FT /evidence="ECO:0000250|UniProtKB:Q9H6E5" FT BINDING 552 FT /ligand="UTP" FT /ligand_id="ChEBI:CHEBI:46398" FT /evidence="ECO:0000250|UniProtKB:Q9H6E5" FT MOD_RES 688 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:21183079" FT MOD_RES 744 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q3MHT4" FT VAR_SEQ 391..405 FT /note="LALYNSRFLNLCSEM -> YFCVGLKAGSKVWGI (in isoform 2)" FT /evidence="ECO:0000303|PubMed:16141072" FT /id="VSP_021201" FT VAR_SEQ 406..869 FT /note="Missing (in isoform 2)" FT /evidence="ECO:0000303|PubMed:16141072" FT /id="VSP_021202" SQ SEQUENCE 869 AA; 94603 MW; 0D0D2C73AAC78A25 CRC64; MAAVDSDVVS LPRGRFRCCL CDVTTANRPS LDAHLKGRKH RDLVQLRATR KAQGLRSVFV SGFPRDVGSA QLSEYFQTFG PVANIVMDKD KGVFAIVEMG DISAREAVLS QPKHSLGGHG LRVRPREQKE FQSPASKSPK GVDSSSHQLV QALAEAADVG AQMVKLVELR ELSEAERQLR NLVVALMQEV FTEFFPGCVV HPFGSTVNSF DVHGCDLDLF LDMGDMEETE PDPKAPKVPE TSSLDSALAS SLDPQALACT PASPLDSLSP TSVQESESLD FDTPSSLAPQ TPDSALGSDT VTSPQSLPPV SPLQEDRKEG KQGKELELAE EASKDEKEEA AAVLELVGSI LRGCVPGVYR VQTVPSARRP VVKFCHRPSG LHGDVSLSNR LALYNSRFLN LCSEMDGRVR PLVYTLRCWA QHNGLSGGGP LLNNYALTLL VIYFLQTRDP PVLPTVAQLT QRAGEGEQVE VDGWDCSFPK DASRLEPSTN VEPLSSLLAQ FFSCVSCLDL SGSLLSLREG RPLMVAEGLP SDLWEGLRLG PMNLQDPFDL SHNVAANVTG RVAKRLQSCC GAAASYCRSL QYQQRSSRGR DWGLLPLLQP SSPSSLLSAK LIPLPSAPFP QVIMALVDVL REALGCHIEQ GTKRRRSEGA RIKDSPLGGV NKRQRLGGQE KSFEEGKEEP QGCAGDHSEN EVEEMVIEVR ETPQDWALLH SGPPEEELPL MTANCLDKAA EHNPMKPEVA GEGSQGETGK EASHPSSVSW RCALWHQVWQ GRRRARRRLQ QQTKEEGRGG PTTGAEWLAM EARVTQELKG PNSEQERPPG EPLLSFVASA SQAEQTLTVA PLQDSQGLFP GLHHFLQGFI PQALKNLLK //