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Protein
Submitted name:

Sec24c protein

Gene

Sec24c

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Protein transportSAAS annotation, Transport

Names & Taxonomyi

Protein namesi
Submitted name:
Sec24c proteinImported
Gene namesi
Name:Sec24cImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:1919746. Sec24c.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiQ8R2V9.

Expressioni

Gene expression databases

BgeeiQ8R2V9.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000045955.

Structurei

3D structure databases

ProteinModelPortaliQ8R2V9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini2 – 8584Sec23_trunkInterPro annotationAdd
BLAST
Domaini90 – 17384Sec23_BSInterPro annotationAdd
BLAST
Domaini186 – 285100Sec23_helicalInterPro annotationAdd
BLAST
Domaini305 – 37672Gelsolin-likeInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG1985. Eukaryota.
COG5028. LUCA.
HOVERGENiHBG062229.

Family and domain databases

Gene3Di3.40.20.10. 1 hit.
3.40.50.410. 1 hit.
InterProiIPR029006. ADF-H/Gelsolin-like_dom.
IPR007123. Gelsolin-like_dom.
IPR006900. Sec23/24_helical_dom.
IPR006896. Sec23/24_trunk_dom.
IPR012990. Sec23_24_beta_S.
IPR002035. VWF_A.
[Graphical view]
PfamiPF00626. Gelsolin. 1 hit.
PF08033. Sec23_BS. 1 hit.
PF04815. Sec23_helical. 1 hit.
PF04811. Sec23_trunk. 1 hit.
[Graphical view]
SUPFAMiSSF53300. SSF53300. 1 hit.
SSF81811. SSF81811. 1 hit.
SSF82754. SSF82754. 1 hit.

Sequencei

Sequence statusi: Fragment.

Q8R2V9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
DDRKLINTDK EKTLFQPQTG TYQTLAKECV AQGCCVDLFL FPNQYVDVAT
60 70 80 90 100
LSVVPQLTGG SVYKYACFQV ENDQERFLSD LRRDVQKVVG FDAVMRVRTS
110 120 130 140 150
TGIRAVDFFG AFYMSNTTDV ELAGLDGDKT VTVEFKHDDR LNEENGALLQ
160 170 180 190 200
CALLYTSCAG QRRLRIHNLA LNCCTQLADL YRNCETDTLI NYMAKFAYRA
210 220 230 240 250
VLNSPVKTVR DTLITQCAQI LACYRKNCAS PSSAGQLILP ECMKLLPVYL
260 270 280 290 300
NCVLKSDVLQ PGAEVTTDDR AYVRQLVSSM DVAETNVFFY PRLLPLTKSP
310 320 330 340 350
LDSTAEPPAV RASEERLSSG DIYLLENGLN LFVWVGASVQ QGVVQSLFNV
360 370 380 390 400
SSFSQITSGL SVLPVLDNPL SKKVRGLIDS LRAQRMRYMK LIVVKQEDKL
410 420 430
EMLFKHFLVE DKSLSGGASY VDFLCHMHKE IRQLLS
Length:436
Mass (Da):48,814
Last modified:June 1, 2002 - v1
Checksum:i061FDDC40726BC25
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC027157 mRNA. Translation: AAH27157.1.
UniGeneiMm.173119.

Genome annotation databases

UCSCiuc007skj.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC027157 mRNA. Translation: AAH27157.1.
UniGeneiMm.173119.

3D structure databases

ProteinModelPortaliQ8R2V9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000045955.

Proteomic databases

PaxDbiQ8R2V9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

UCSCiuc007skj.1. mouse.

Organism-specific databases

MGIiMGI:1919746. Sec24c.

Phylogenomic databases

eggNOGiKOG1985. Eukaryota.
COG5028. LUCA.
HOVERGENiHBG062229.

Miscellaneous databases

ChiTaRSiSec24c. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiQ8R2V9.

Family and domain databases

Gene3Di3.40.20.10. 1 hit.
3.40.50.410. 1 hit.
InterProiIPR029006. ADF-H/Gelsolin-like_dom.
IPR007123. Gelsolin-like_dom.
IPR006900. Sec23/24_helical_dom.
IPR006896. Sec23/24_trunk_dom.
IPR012990. Sec23_24_beta_S.
IPR002035. VWF_A.
[Graphical view]
PfamiPF00626. Gelsolin. 1 hit.
PF08033. Sec23_BS. 1 hit.
PF04815. Sec23_helical. 1 hit.
PF04811. Sec23_trunk. 1 hit.
[Graphical view]
SUPFAMiSSF53300. SSF53300. 1 hit.
SSF81811. SSF81811. 1 hit.
SSF82754. SSF82754. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: FVB/NImported.
    Tissue: Mammary tumor. C3Imported.

Entry informationi

Entry nameiQ8R2V9_MOUSE
AccessioniPrimary (citable) accession number: Q8R2V9
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2002
Last sequence update: June 1, 2002
Last modified: May 11, 2016
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.