Q8R1U8 (Q8R1U8_MOUSE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Efemp1 protein EMBL AAH23060.1

Gene names

Name:

Efemp1 EMBL AAH23060.1 MGI 1339998

Organism

Mus musculus (Mouse) EMBL AAH23060.1

Taxonomic identifier

10090 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length	188 AA.
Sequence status	Fragment.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Domain	EGF-like domain SAAS SAAS026823 Repeat SAAS SAAS026823
PTM	Disulfide bond SAAS SAAS026823
Gene Ontology (GO)
Biological_process	negative regulation of chondrocyte differentiation Inferred from electronic annotation. Source: Compara peptidyl-tyrosine phosphorylation Inferred from electronic annotation. Source: Compara regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: Compara
Cellular_component	extracellular matrix Inferred from electronic annotation. Source: Compara extracellular space Inferred from electronic annotation. Source: Compara
Molecular_function	calcium ion binding Inferred from electronic annotation. Source: InterPro epidermal growth factor-activated receptor activity Inferred from electronic annotation. Source: Compara
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL AAH23060.1

Sequences

	Sequence		Length	Mass (Da)
	Q8R1U8 [UniParc]. Last modified June 1, 2002. Version 1. Checksum: 427A790838F116CB	FASTA	188	21,564
	10 20 30 40 50 60 QYQCVNEPGK FSCMCPQGYE VVRSRTCQDI NECETTNECR EDEMCWNYHG GFRCYPRNPC 70 80 90 100 110 120 QDHYVLTSEN RCVCPVSNTM CRELPQSIVY KYMSIRSDRS VPSDIFQIQA TMIYANTINT 130 140 150 160 170 180 FRIKSGNENG EFYLRQTSPV SAMLVLVKSL SGPREYIVDL EMLTVSSIGT FRTSSVLRLT IIVGPFSF

References

[1]

"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J. Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Eye EMBL AAH23060.1.

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Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BC023060 mRNA. Translation: AAH23060.1.
IPI	IPI00223457.
UniGene	Mm.44176.
3D structure databases
HSSP	HSSP built from PDB template 1LMJ based on UniProtKB P35555.
ProteinModelPortal	Q8R1U8.
ModBase	Search...
Protein-protein interaction databases
STRING	Q8R1U8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Organism-specific databases
MGI	MGI:1339998. Efemp1.
Phylogenomic databases
HOVERGEN	HBG051560.
InParanoid	Q8R1U8.
Gene expression databases
ArrayExpress	Q8R1U8.
Bgee	Q8R1U8.
Genevestigator	Q8R1U8.
Family and domain databases
InterPro	IPR026823. cEGF. IPR026824. Efemp1/Efemp2. IPR013032. EGF-like_CS. IPR018097. EGF_Ca-bd_CS. [Graphical view]
PANTHER	PTHR24048:SF2. PTHR24048:SF2. 1 hit.
Pfam	PF12662. cEGF. 1 hit. [Graphical view]
PROSITE	PS01186. EGF_2. 1 hit. PS01187. EGF_CA. 1 hit. [Graphical view]
ProtoNet	Search...
Other
SOURCE	Search...

Entry information

Entry name

Q8R1U8_MOUSE

Accession

Primary (citable) accession number: Q8R1U8

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2002
Last sequence update:	June 1, 2002
Last modified:	April 3, 2013
This is version 56 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)