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Protein

Putative HTH-type transcriptional regulatory protein MM_0444

Gene

MM_0444

Organism
Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (Methanosarcina frisia)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi143 – 16220H-T-H motifUniRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciMMAZ192952:GCK2-461-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative HTH-type transcriptional regulatory protein MM_0444UniRule annotation
Gene namesi
Ordered Locus Names:MM_0444
OrganismiMethanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (Methanosarcina frisia)
Taxonomic identifieri192952 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanomicrobiaMethanosarcinalesMethanosarcinaceaeMethanosarcina
Proteomesi
  • UP000000595 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 327327Putative HTH-type transcriptional regulatory protein MM_0444PRO_0000144858Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi192952.MM_0444.

Structurei

3D structure databases

ProteinModelPortaliQ8PZP8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini132 – 19059HTH cro/C1-typeUniRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH cro/C1-type DNA-binding domain.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04152. Archaea.
COG1395. LUCA.
HOGENOMiHOG000230106.
KOiK07728.
OMAiGVVYFRH.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
HAMAPiMF_00584. HTH_type_cro_C1.
InterProiIPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
IPR020886. Tscrpt_reg_HTH_Cro/C1.
[Graphical view]
PfamiPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8PZP8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTKEVLIHQI IDVLARAGFA LSDRCNIRPR SFDVAARKDD TLLLCKVLFN
60 70 80 90 100
IDGLNEETAR EMKYLAEYLG GSAIVVGAKT RDQMLEDSVV YMRYDILALS
110 120 130 140 150
VQTLYDYFVE NIRPLVSAAP GGLYVSIEGD LLKKARTTQS MSLGTLASMV
160 170 180 190 200
GVSRRTISKY EEEGMDASID VVLHLEDIFG VELAKPIDIL KSCGSRKPRK
210 220 230 240 250
KAEPEKEEPK GKPGTLLPED LILNTISMLG YDVLPTAQAP FKAISRDKSS
260 270 280 290 300
VILTGVSEFN TTVIKRAHLM SSISCITETQ SVFIINGRSK LKSVENTVLI
310 320
EKKELDTISD SQELLDFIEE RKDTHEA
Length:327
Mass (Da):36,296
Last modified:October 25, 2002 - v1
Checksum:i8C155EF3CA6EE1F5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008384 Genomic DNA. Translation: AAM30140.1.
RefSeqiWP_011032397.1. NC_003901.1.

Genome annotation databases

EnsemblBacteriaiAAM30140; AAM30140; MM_0444.
GeneIDi24863958.
KEGGimma:MM_0444.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008384 Genomic DNA. Translation: AAM30140.1.
RefSeqiWP_011032397.1. NC_003901.1.

3D structure databases

ProteinModelPortaliQ8PZP8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi192952.MM_0444.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAM30140; AAM30140; MM_0444.
GeneIDi24863958.
KEGGimma:MM_0444.

Phylogenomic databases

eggNOGiarCOG04152. Archaea.
COG1395. LUCA.
HOGENOMiHOG000230106.
KOiK07728.
OMAiGVVYFRH.

Enzyme and pathway databases

BioCyciMMAZ192952:GCK2-461-MONOMER.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
HAMAPiMF_00584. HTH_type_cro_C1.
InterProiIPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
IPR020886. Tscrpt_reg_HTH_Cro/C1.
[Graphical view]
PfamiPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome of Methanosarcina mazei: evidence for lateral gene transfer between Bacteria and Archaea."
    Deppenmeier U., Johann A., Hartsch T., Merkl R., Schmitz R.A., Martinez-Arias R., Henne A., Wiezer A., Baeumer S., Jacobi C., Brueggemann H., Lienard T., Christmann A., Boemecke M., Steckel S., Bhattacharyya A., Lykidis A., Overbeek R.
    , Klenk H.-P., Gunsalus R.P., Fritz H.-J., Gottschalk G.
    J. Mol. Microbiol. Biotechnol. 4:453-461(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88.

Entry informationi

Entry nameiY444_METMA
AccessioniPrimary (citable) accession number: Q8PZP8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 25, 2002
Last sequence update: October 25, 2002
Last modified: November 11, 2015
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.