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Protein

Protein MM_0484

Gene

MM_0484

Organism
Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (Methanosarcina frisia)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Protein MM_0484UniRule annotation
Gene namesi
Ordered Locus Names:MM_0484
OrganismiMethanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (Methanosarcina frisia)
Taxonomic identifieri192952 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanomicrobiaMethanosarcinalesMethanosarcinaceaeMethanosarcina
Proteomesi
  • UP000000595 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001423791 – 199Protein MM_0484Add BLAST199

Interactioni

Protein-protein interaction databases

STRINGi192952.MM_0484.

Structurei

Secondary structure

1199
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi4 – 24Combined sources21
Helixi39 – 42Combined sources4
Beta strandi47 – 53Combined sources7
Beta strandi56 – 63Combined sources8
Helixi70 – 83Combined sources14
Helixi93 – 98Combined sources6
Beta strandi100 – 106Combined sources7
Turni116 – 118Combined sources3
Helixi119 – 122Combined sources4
Turni125 – 127Combined sources3
Beta strandi129 – 134Combined sources6
Beta strandi137 – 141Combined sources5
Helixi145 – 148Combined sources4
Helixi153 – 163Combined sources11
Helixi168 – 171Combined sources4
Turni172 – 174Combined sources3
Beta strandi176 – 180Combined sources5
Beta strandi182 – 189Combined sources8
Beta strandi194 – 197Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1ZQ7X-ray2.11A/B/C/D1-199[»]
ProteinModelPortaliQ8PZK8.
SMRiQ8PZK8.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8PZK8.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 196AMMECR1UniRule annotationAdd BLAST192

Sequence similaritiesi

Contains 1 AMMECR1 domain.UniRule annotation

Phylogenomic databases

eggNOGiarCOG01336. Archaea.
COG2078. LUCA.
HOGENOMiHOG000223417.
KOiK09141.
OMAiTFLDHTC.

Family and domain databases

Gene3Di3.30.700.20. 1 hit.
HAMAPiMF_00645. AMMECR1. 1 hit.
InterProiIPR023473. AMMECR1.
IPR002733. AMMECR1_domain.
IPR027485. AMMECR1_N.
IPR027623. AmmeMemoSam_A.
IPR023472. Uncharacterised_MJ0810.
[Graphical view]
PANTHERiPTHR13016. PTHR13016. 1 hit.
PfamiPF01871. AMMECR1. 1 hit.
[Graphical view]
SUPFAMiSSF143447. SSF143447. 1 hit.
TIGRFAMsiTIGR04335. AmmeMemoSam_A. 1 hit.
TIGR00296. TIGR00296. 1 hit.
PROSITEiPS51112. AMMECR1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8PZK8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLTETEGRAA VKLARKTIEI FLSKGKSPRP DASGVELSPV FEEYRGVFVT
60 70 80 90 100
LTEGGLLRGC IGHPYPDSTL KEAILDSAIS AATRDPRFPT VEQDEMKNIL
110 120 130 140 150
VEVTILTQPE KINASPKELP DKVEIGKHGL IVKQGYCQGL LLPQVAPEND
160 170 180 190
MDSIDFLSHT CMKAGLSPDA WVKGAEVYCF EGQIFKEKEP DGEVIEEKF
Length:199
Mass (Da):21,907
Last modified:October 1, 2002 - v1
Checksum:i0778DF76B6EC57F6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008384 Genomic DNA. Translation: AAM30180.1.
RefSeqiWP_011032437.1. NC_003901.1.

Genome annotation databases

EnsemblBacteriaiAAM30180; AAM30180; MM_0484.
GeneIDi24880693.
KEGGimma:MM_0484.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008384 Genomic DNA. Translation: AAM30180.1.
RefSeqiWP_011032437.1. NC_003901.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1ZQ7X-ray2.11A/B/C/D1-199[»]
ProteinModelPortaliQ8PZK8.
SMRiQ8PZK8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi192952.MM_0484.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAM30180; AAM30180; MM_0484.
GeneIDi24880693.
KEGGimma:MM_0484.

Phylogenomic databases

eggNOGiarCOG01336. Archaea.
COG2078. LUCA.
HOGENOMiHOG000223417.
KOiK09141.
OMAiTFLDHTC.

Miscellaneous databases

EvolutionaryTraceiQ8PZK8.

Family and domain databases

Gene3Di3.30.700.20. 1 hit.
HAMAPiMF_00645. AMMECR1. 1 hit.
InterProiIPR023473. AMMECR1.
IPR002733. AMMECR1_domain.
IPR027485. AMMECR1_N.
IPR027623. AmmeMemoSam_A.
IPR023472. Uncharacterised_MJ0810.
[Graphical view]
PANTHERiPTHR13016. PTHR13016. 1 hit.
PfamiPF01871. AMMECR1. 1 hit.
[Graphical view]
SUPFAMiSSF143447. SSF143447. 1 hit.
TIGRFAMsiTIGR04335. AmmeMemoSam_A. 1 hit.
TIGR00296. TIGR00296. 1 hit.
PROSITEiPS51112. AMMECR1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiY484_METMA
AccessioniPrimary (citable) accession number: Q8PZK8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 10, 2003
Last sequence update: October 1, 2002
Last modified: November 2, 2016
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.