Q8PYK9 (Q8PYK9_METMA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Deoxyribodipyrimidine photolyase EMBL AAM30548.1
EC=4.1.99.3 EMBL AAM30548.1

Gene names

Ordered Locus Names:

MM_0852 EMBL AAM30548.1

Organism

Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (Methanosarcina frisia) [Complete proteome] [HAMAP] EMBL AAM30548.1

Taxonomic identifier

192952 [NCBI]

Taxonomic lineage

cellular organisms › Archaea › Euryarchaeota › Methanomicrobia › Methanosarcinales › Methanosarcinaceae › Methanosarcina › Methanosarcina mazei

Protein attributes

Sequence length	464 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Molecular function	Lyase EMBL AAM30548.1
Technical term	3D-structure PDB 2XRY PDB 2XRZ Complete proteome
Gene Ontology (GO)
Biological_process	DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	deoxyribodipyrimidine photo-lyase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q8PYK9 [UniParc]. Last modified October 1, 2002. Version 1. Checksum: C2C763E3119FDF1C	FASTA	464	53,158
	10 20 30 40 50 60 MIMNPKRIRA LKSGKQGDGP VVYWMSRDQR AEDNWALLFS RAIAKEANVP VVVVFCLTDE 70 80 90 100 110 120 FLEAGIRQYE FMLKGLQELE VSLSRKKIPS FFLRGDPGEK ISRFVKDYNA GTLVTDFSPL 130 140 150 160 170 180 RIKNQWIEKV ISGISIPFFE VDAHNVVPCW EASQKHEYAA HTFRPKLYAL LPEFLEEFPE 190 200 210 220 230 240 LEPNSVTPEL SAGAGMVETL SDVLETGVKA LLPERALLKN KDPLFEPWHF EPGEKAAKKV 250 260 270 280 290 300 MESFIADRLD SYGALRNDPT KNMLSNLSPY LHFGQISSQR VVLEVEKAES NPGSKKAFLD 310 320 330 340 350 360 EILIWKEISD NFCYYNPGYD GFESFPSWAK ESLNAHRNDV RSHIYTLEEF EAGKTHDPLW 370 380 390 400 410 420 NASQMELLST GKMHGYMRMY WAKKILEWSE SPEKALEIAI CLNDRYELDG RDPNGYAGIA 430 440 450 460 WSIGGVHDRA WGEREVTGKI RYMSYEGCKR KFDVKLYIEK YSAL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea." Deppenmeier U., Johann A., Hartsch T., Merkl R., Schmitz R.A., Martinez-Arias R., Henne A., Wiezer A., Baumer S., Jacobi C., Bruggemann H., Lienard T., Christmann A., Bomeke M., Steckel S., Bhattacharyya A., Lykidis A., Overbeek R. , Klenk H.P., Gunsalus R.P., Fritz H.J., Gottschalk G. J. Mol. Microbiol. Biotechnol. 4:453-461(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88.
[2]	"Crystal structures of an archaeal class II DNA photolyase and its complex with UV-damaged duplex DNA." Kiontke S., Geisselbrecht Y., Pokorny R., Carell T., Batschauer A., Essen L.O. EMBO J. 30:4437-4449(2011) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.50 ANGSTROMS) OF 3-464.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AE008384 Genomic DNA. Translation: AAM30548.1.

RefSeq

NP_632876.1. NC_003901.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2XRY	X-ray	1.50	A	3-464	[»]
2XRZ	X-ray	2.20	A/B	3-464	[»]

ProteinModelPortal

Q8PYK9.

ModBase

Search...

Protein-protein interaction databases

STRING

192952.MM_0852.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

AAM30548; AAM30548; MM_0852.

GeneID

1479194.

KEGG

mma:MM_0852.

Organism-specific databases

CMR

Search...

Phylogenomic databases

eggNOG

COG0415.

HOGENOM

HOG000016456.

KO

K01669.

OMA

LADNFCF.

ProtClustDB

CLSK2754618.

Enzyme and pathway databases

BioCyc

MMAZ192952:GCK2-876-MONOMER.

Family and domain databases

Gene3D

3.40.50.620. 1 hit.

InterPro

IPR008148. DNA_photolyase_2.
IPR006050. DNA_photolyase_N.
IPR005101. Photolyase_FAD-bd/Cryptochr_C.
IPR014729. Rossmann-like_a/b/a_fold.
[Graphical view]

PANTHER

PTHR10211. PTHR10211. 1 hit.

Pfam

PF00875. DNA_photolyase. 1 hit.
PF03441. FAD_binding_7. 1 hit.
[Graphical view]

SUPFAM

SSF52425. DNA_photolyase_N. 1 hit.
SSF48173. Photolyase_FAD-bd/Cryptochr_C. 1 hit.

TIGRFAMs

TIGR00591. phr2. 1 hit.

PROSITE

PS51645. PHR_CRY_ALPHA_BETA. 1 hit.
[Graphical view]

ProtoNet

Search...

Other

EvolutionaryTrace

Q8PYK9.

Entry information

Entry name

Q8PYK9_METMA

Accession

Primary (citable) accession number: Q8PYK9

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2002
Last sequence update:	October 1, 2002
Last modified:	May 29, 2013
This is version 61 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)