Putative oxidoreductase - Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)

Preferred order of sections

Names and origin

Protein names

Submitted name:
Putative oxidoreductase EMBL AAM32189.1

Gene names

Ordered Locus Names:

MM_2493

Organism

Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (Methanosarcina frisia) [Complete proteome] [HAMAP] EMBL AAM32189.1

Taxonomic identifier

192952 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Methanomicrobia › Methanosarcinales › Methanosarcinaceae › Methanosarcina

Protein attributes

Sequence length	425 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Ligand	FAD PDB 3KA7 Flavoprotein PDB 3KA7 Nucleotide-binding PDB 3KA7
Technical term	3D-structure PDB 3KA7 Complete proteome
Gene Ontology (GO)
Molecular function	nucleotide binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Regions

Nucleotide binding

52 – 56

5

FAD PDB 3KA7

Sites

Binding site

11

1

FAD; via amide nitrogen PDB 3KA7

Binding site

30

1

FAD PDB 3KA7

Binding site

38

1

FAD PDB 3KA7

Binding site

219

1

FAD; via amide nitrogen and carbonyl oxygen PDB 3KA7

Binding site

247

1

FAD PDB 3KA7

Binding site

370

1

FAD PDB 3KA7

Binding site

378

1

FAD PDB 3KA7

Binding site

399

1

FAD PDB 3KA7

Binding site

409

1

FAD; via amide nitrogen PDB 3KA7

Sequences

Sequence

Length

Mass (Da)

Tools

Q8PU56 [UniParc].

Last modified October 1, 2002. Version 1.
Checksum: 6449FF87FEEF088B
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FASTA

425

45,575

        10         20         30         40         50         60 
MKTVVIGAGL GGLLSAARLS KAGHEVEVFE RLPITGGRFT NLSYKGFQLS SGAFHMLPNG 

        70         80         90        100        110        120 
PGGPLACFLK EVEASVNIVR SEMTTVRVPL KKGNPDYVKG FKDISFNDFP SLLSYKDRMK 

       130        140        150        160        170        180 
IALLIVSTRK NRPSGSSLQA WIKSQVSDEW LIKFADSFCG WALSLKSDEV PVEEVFEIIE 

       190        200        210        220        230        240 
NMYRFGGTGI PEGGCKGIID ALETVISANG GKIHTGQEVS KILIENGKAA GIIADDRIHD 

       250        260        270        280        290        300 
ADLVISNLGH AATAVLCSEA LSKEADAAYF KMVGTLQPSA GIKICLAADE PLVGHTGVLL 

       310        320        330        340        350        360 
TPYTRRINGV NEVTQADPEL APPGKHLTMC HQYVAPENVK NLESEIEMGL EDLKEIFPGK 

       370        380        390        400        410        420 
RYEVLLIQSY HDEWPVNRAA SGTDPGNETP FSGLYVVGDG AKGKGGIEVE GVALGVMSVM 


EKVLG

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References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome of Methanosarcina mazei: evidence for lateral gene transfer between Bacteria and Archaea." Deppenmeier U., Johann A., Hartsch T., Merkl R., Schmitz R.A., Martinez-Arias R., Henne A., Wiezer A., Baeumer S., Jacobi C., Brueggemann H., Lienard T., Christmann A., Boemecke M., Steckel S., Bhattacharyya A., Lykidis A., Overbeek R. Gottschalk G. J. Mol. Microbiol. Biotechnol. 4:453-461(2002) [PubMed: 12125824] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88.
[2]	"Crystal Structure of an oxidoreductase from Methanosarcina mazei." Seetharaman J., Su M., Sahdev S., Janjua H., Xiao R., Ciccosanti C., Foote E.L., Acton T.B., Rost B., Montelione G.T., Tong L., Hunt J.F. Submitted (OCT-2009) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) IN COMPLEX WITH FAD.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AE008384 Genomic DNA. Translation: AAM32189.1.

RefSeq

NP_634517.1. NC_003901.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3KA7	X-ray	1.80	A	1-425	[»]

ProteinModelPortal

Q8PU56.

ModBase

Search...

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

1480835.

GenomeReviews

Gene locus MM_2493 in contig AE008384_GR.

KEGG

mma:MM_2493.

Organism-specific databases

CMR

Search...

Phylogenomic databases

eggNOG

COG1233.

HOGENOM

HOG000254466.

OMA

GALHMIP.

ProtClustDB

CLSK876593.

Family and domain databases

ProtoNet

Search...

Other

EvolutionaryTrace

Q8PU56.

Entry information

Entry name

Q8PU56_METMA

Accession

Primary (citable) accession number: Q8PU56

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2002
Last sequence update:	October 1, 2002
Last modified:	May 16, 2012
This is version 50 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)