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Protein

Outer membrane protein assembly factor BamE

Gene

smpA

Organism
Xanthomonas axonopodis pv. citri (strain 306)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.UniRule annotation

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciXAXO190486:GH55-1516-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Outer membrane protein assembly factor BamEUniRule annotation
Gene namesi
Name:smpAImported
Synonyms:bamEUniRule annotation
Ordered Locus Names:XAC1516Imported
OrganismiXanthomonas axonopodis pv. citri (strain 306)Imported
Taxonomic identifieri190486 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
Proteomesi
  • UP000000576 Componenti: Chromosome

Subcellular locationi

  • Cell outer membrane UniRule annotation; Lipid-anchor UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell outer membraneUniRule annotation, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1616UniRule annotationAdd
BLAST
Chaini17 – 131115Outer membrane protein assembly factor BamEUniRule annotationPRO_5005078880Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Lipidationi17 – 171N-palmitoyl cysteineUniRule annotation
Lipidationi17 – 171S-diacylglycerol cysteineUniRule annotation

Keywords - PTMi

Lipoprotein, PalmitateUniRule annotation

Interactioni

Subunit structurei

Part of the Bam complex.UniRule annotation

Protein-protein interaction databases

STRINGi190486.XAC1516.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2PXGNMR-A15-131[»]
ProteinModelPortaliQ8PMB6.
SMRiQ8PMB6. Positions 15-131.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8PMB6.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini28 – 9871SmpA_OmlAInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the BamE family.UniRule annotation

Keywords - Domaini

SignalUniRule annotation

Phylogenomic databases

eggNOGiENOG4105YRI. Bacteria.
COG2913. LUCA.
HOGENOMiHOG000256181.
KOiK06186.
OMAiHYPSRFA.
OrthoDBiEOG6J48RK.

Family and domain databases

HAMAPiMF_00925. OM_assembly_BamE.
InterProiIPR026592. BamE.
IPR007450. Lipoprotein_SmpA/OmlA.
[Graphical view]
PfamiPF04355. SmpA_OmlA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q8PMB6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRNLLLVAAV ALSTAGCGII YKQPIYQGNL IKQNAVEQLQ VGQSKQQVSA
60 70 80 90 100
LLGTPSIPDP FHAQRWDYTS TQRVDRLART EIKNFTVFFE NEQVVRWEGD
110 120 130
YFPSQDEQLA KAAPKQFGRN LARDKKKQRG R
Length:131
Mass (Da):14,922
Last modified:October 1, 2002 - v1
Checksum:iCAF4B2C1B40CDCFE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008923 Genomic DNA. Translation: AAM36385.1.
RefSeqiWP_003483624.1. NC_003919.1.

Genome annotation databases

EnsemblBacteriaiAAM36385; AAM36385; XAC1516.
GeneIDi14852271.
KEGGixac:XAC1516.
PATRICi24055025. VBIXanAxo33670_1592.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008923 Genomic DNA. Translation: AAM36385.1.
RefSeqiWP_003483624.1. NC_003919.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2PXGNMR-A15-131[»]
ProteinModelPortaliQ8PMB6.
SMRiQ8PMB6. Positions 15-131.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi190486.XAC1516.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAM36385; AAM36385; XAC1516.
GeneIDi14852271.
KEGGixac:XAC1516.
PATRICi24055025. VBIXanAxo33670_1592.

Phylogenomic databases

eggNOGiENOG4105YRI. Bacteria.
COG2913. LUCA.
HOGENOMiHOG000256181.
KOiK06186.
OMAiHYPSRFA.
OrthoDBiEOG6J48RK.

Enzyme and pathway databases

BioCyciXAXO190486:GH55-1516-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ8PMB6.

Family and domain databases

HAMAPiMF_00925. OM_assembly_BamE.
InterProiIPR026592. BamE.
IPR007450. Lipoprotein_SmpA/OmlA.
[Graphical view]
PfamiPF04355. SmpA_OmlA. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Comparison of the genomes of two Xanthomonas pathogens with differing host specificities."
    da Silva A.C.R., Ferro J.A., Reinach F.C., Farah C.S., Furlan L.R., Quaggio R.B., Monteiro-Vitorello C.B., Van Sluys M.A., Almeida N.F.Jr., Alves L.M.C., do Amaral A.M., Bertolini M.C., Camargo L.E.A., Camarotte G., Cannavan F., Cardozo J., Chambergo F., Ciapina L.P.
    , Cicarelli R.M.B., Coutinho L.L., Cursino-Santos J.R., El-Dorry H., Faria J.B., Ferreira A.J.S., Ferreira R.C.C., Ferro M.I.T., Formighieri E.F., Franco M.C., Greggio C.C., Gruber A., Katsuyama A.M., Kishi L.T., Leite R.P.Jr., Lemos E.G.M., Lemos M.V.F., Locali E.C., Machado M.A., Madeira A.M.B.N., Martinez-Rossi N.M., Martins E.C., Meidanis J., Menck C.F.M., Miyaki C.Y., Moon D.H., Moreira L.M., Novo M.T.M., Okura V.K., Oliveira M.C., Oliveira V.R., Pereira H.A.Jr., Rossi A., Sena J.A.D., Silva C., de Souza R.F., Spinola L.A.F., Takita M.A., Tamura R.E., Teixeira E.C., Tezza R.I.D., Trindade dos Santos M., Truffi D., Tsai S.M., White F.F., Setubal J.C., Kitajima J.P.
    Nature 417:459-463(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 306Imported.
  2. "The solution structure of the outer membrane lipoprotein OmlA from Xanthomonas axonopodis pv. citri reveals a protein fold implicated in protein-protein interaction."
    Vanini M.M., Spisni A., Sforca M.L., Pertinhez T.A., Benedetti C.E.
    Proteins 71:2051-2064(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: STRUCTURE BY NMR OF 15-131.

Entry informationi

Entry nameiQ8PMB6_XANAC
AccessioniPrimary (citable) accession number: Q8PMB6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2002
Last sequence update: October 1, 2002
Last modified: March 16, 2016
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.