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Q8PJW3

- Q8PJW3_XANAC

UniProt

Q8PJW3 - Q8PJW3_XANAC

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

lig3

Organism
Xanthomonas axonopodis pv. citri (strain 306)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 79 (01 Oct 2014)
      Sequence version 1 (01 Oct 2002)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciXAXO190486:GH55-2414-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    Name:lig3Imported
    Ordered Locus Names:XAC2414Imported
    OrganismiXanthomonas axonopodis pv. citri (strain 306)Imported
    Taxonomic identifieri190486 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
    ProteomesiUP000000576: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi190486.XAC2414.

    Structurei

    3D structure databases

    ProteinModelPortaliQ8PJW3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiSACDMAL.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q8PJW3-1 [UniParc]FASTAAdd to Basket

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    MSLSEYRRKR SFDKTREPEP GKTLPPGQRA IFVVQLHHAS RRHYDFRLQV    50
    GDALKSWAVP KGPSYDPKVK RMAVEVEDHP VDYASFEGEI PRGEYGGGHV 100
    AQFDHGVWAT AGDPEAQLAK GHLRFELFGN KLKGGWHLVR SGKPARQPQW 150
    LLFKEDDAYA GTLEADDLLA DVAATPADDV RRAGAGKTQR KGLTTVPPPA 200
    AKKRGTWAKQ ALALSGARRA EMEDAPFAPQ LAKLVQSPPE GAQWLHEIKW 250
    DGYRILATVT NGKVRLWSRN ALEWTDKTPE IADAIQSLGL RNAQIDGELI 300
    AGRGTKEDFN LLQATLSGER QVPLALAVFD LLHVDGVDIS EAPLRERKQL 350
    LQQVLQAAPH MHLAYSSHVE GDGTEAFRVA GEQHFEGIIS KRADRPYRDG 400
    RSDDWRKTKQ LASQEYAVVG YTAPKGSRSG FGSLLLATPD PVHGWLYVGR 450
    VGSGFSDALM REVTQQLEGG GRKPTAHIPT PDTDLRGATW FAPRFVVEVF 500
    YRGIGGQQLL RQASFKALRP DKRIADLADS DAGNGRSTSS STQRSAKTRA 550
    AKNAATQVAK RAATRATAPA RKSAVATPSS AALPTLSSPT KLIYPDIRAT 600
    KGDVWDYYQA VMDHLLPQIV GRPLSIIRCP SGAEKPCFFQ KHHTAGLERV 650
    SSVKLTEETG TNAYYLVIED APGLLELVQF NALEFHPWGS HADRPDVADR 700
    VVFDLDPGPD VPFAEVKRAA NDIRKLLAQL ELESFLRVSG GKGLHVVVPL 750
    NPGCDWEVTK RFAKGFADAL AQAEPQRFIA TATKRLRNKR IFVDYLRNGR 800
    GATAVASYPL RGRPGAPVAL PLAWSDLSKL QRADAFTLRD VPEKLRRRRK 850
    DPWADMDRIR QNLARWAEQD ED 872
    Length:872
    Mass (Da):96,306
    Last modified:October 1, 2002 - v1
    Checksum:i3C5AC9FBA2F08921
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE008923 Genomic DNA. Translation: AAM37266.1.
    RefSeqiNP_642730.1. NC_003919.1.

    Genome annotation databases

    EnsemblBacteriaiAAM37266; AAM37266; XAC2414.
    GeneIDi1156485.
    KEGGixac:XAC2414.
    PATRICi24056902. VBIXanAxo33670_2513.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE008923 Genomic DNA. Translation: AAM37266.1 .
    RefSeqi NP_642730.1. NC_003919.1.

    3D structure databases

    ProteinModelPortali Q8PJW3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 190486.XAC2414.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAM37266 ; AAM37266 ; XAC2414 .
    GeneIDi 1156485.
    KEGGi xac:XAC2414.
    PATRICi 24056902. VBIXanAxo33670_2513.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi SACDMAL.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci XAXO190486:GH55-2414-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Comparison of the genomes of two Xanthomonas pathogens with differing host specificities."
      da Silva A.C.R., Ferro J.A., Reinach F.C., Farah C.S., Furlan L.R., Quaggio R.B., Monteiro-Vitorello C.B., Van Sluys M.A., Almeida N.F. Jr., Alves L.M.C., do Amaral A.M., Bertolini M.C., Camargo L.E.A., Camarotte G., Cannavan F., Cardozo J., Chambergo F., Ciapina L.P.
      , Cicarelli R.M.B., Coutinho L.L., Cursino-Santos J.R., El-Dorry H., Faria J.B., Ferreira A.J.S., Ferreira R.C.C., Ferro M.I.T., Formighieri E.F., Franco M.C., Greggio C.C., Gruber A., Katsuyama A.M., Kishi L.T., Leite R.P., Lemos E.G.M., Lemos M.V.F., Locali E.C., Machado M.A., Madeira A.M.B.N., Martinez-Rossi N.M., Martins E.C., Meidanis J., Menck C.F.M., Miyaki C.Y., Moon D.H., Moreira L.M., Novo M.T.M., Okura V.K., Oliveira M.C., Oliveira V.R., Pereira H.A., Rossi A., Sena J.A.D., Silva C., de Souza R.F., Spinola L.A.F., Takita M.A., Tamura R.E., Teixeira E.C., Tezza R.I.D., Trindade dos Santos M., Truffi D., Tsai S.M., White F.F., Setubal J.C., Kitajima J.P.
      Nature 417:459-463(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 306Imported.

    Entry informationi

    Entry nameiQ8PJW3_XANAC
    AccessioniPrimary (citable) accession number: Q8PJW3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 1, 2002
    Last sequence update: October 1, 2002
    Last modified: October 1, 2014
    This is version 79 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3