Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

ATP-dependent DNA ligase

Gene

lig3

Organism
Xanthomonas axonopodis pv. citri (strain 306)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Name:lig3Imported
Ordered Locus Names:XAC2414Imported
OrganismiXanthomonas axonopodis pv. citri (strain 306)Imported
Taxonomic identifieri190486 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
Proteomesi
  • UP000000576 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi190486.XAC2414

Structurei

3D structure databases

ProteinModelPortaliQ8PJW3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini317 – 410DNA_LIGASE_A3InterPro annotationAdd BLAST94

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili713 – 733Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG4108EX0 Bacteria
COG1793 LUCA
COG3285 LUCA
HOGENOMiHOG000222509
KOiK01971
OMAiQEFVICG
OrthoDBiPOG091H0AZ9

Family and domain databases

CDDicd04862 PaeLigD_Pol_like, 1 hit
InterProiView protein in InterPro
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR014146 LigD_ligase_dom
IPR014144 LigD_PE_domain
IPR014145 LigD_pol_dom
IPR012340 NA-bd_OB-fold
IPR014143 NHEJ_ligase_prk
IPR033651 PaeLigD_Pol-like
PfamiView protein in Pfam
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 1 hit
PF13298 LigD_N, 1 hit
SUPFAMiSSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR02777 LigD_PE_dom, 1 hit
TIGR02778 ligD_pol, 1 hit
TIGR02779 NHEJ_ligase_lig, 1 hit
TIGR02776 NHEJ_ligase_prk, 1 hit
PROSITEiView protein in PROSITE
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

Q8PJW3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLSEYRRKR SFDKTREPEP GKTLPPGQRA IFVVQLHHAS RRHYDFRLQV
60 70 80 90 100
GDALKSWAVP KGPSYDPKVK RMAVEVEDHP VDYASFEGEI PRGEYGGGHV
110 120 130 140 150
AQFDHGVWAT AGDPEAQLAK GHLRFELFGN KLKGGWHLVR SGKPARQPQW
160 170 180 190 200
LLFKEDDAYA GTLEADDLLA DVAATPADDV RRAGAGKTQR KGLTTVPPPA
210 220 230 240 250
AKKRGTWAKQ ALALSGARRA EMEDAPFAPQ LAKLVQSPPE GAQWLHEIKW
260 270 280 290 300
DGYRILATVT NGKVRLWSRN ALEWTDKTPE IADAIQSLGL RNAQIDGELI
310 320 330 340 350
AGRGTKEDFN LLQATLSGER QVPLALAVFD LLHVDGVDIS EAPLRERKQL
360 370 380 390 400
LQQVLQAAPH MHLAYSSHVE GDGTEAFRVA GEQHFEGIIS KRADRPYRDG
410 420 430 440 450
RSDDWRKTKQ LASQEYAVVG YTAPKGSRSG FGSLLLATPD PVHGWLYVGR
460 470 480 490 500
VGSGFSDALM REVTQQLEGG GRKPTAHIPT PDTDLRGATW FAPRFVVEVF
510 520 530 540 550
YRGIGGQQLL RQASFKALRP DKRIADLADS DAGNGRSTSS STQRSAKTRA
560 570 580 590 600
AKNAATQVAK RAATRATAPA RKSAVATPSS AALPTLSSPT KLIYPDIRAT
610 620 630 640 650
KGDVWDYYQA VMDHLLPQIV GRPLSIIRCP SGAEKPCFFQ KHHTAGLERV
660 670 680 690 700
SSVKLTEETG TNAYYLVIED APGLLELVQF NALEFHPWGS HADRPDVADR
710 720 730 740 750
VVFDLDPGPD VPFAEVKRAA NDIRKLLAQL ELESFLRVSG GKGLHVVVPL
760 770 780 790 800
NPGCDWEVTK RFAKGFADAL AQAEPQRFIA TATKRLRNKR IFVDYLRNGR
810 820 830 840 850
GATAVASYPL RGRPGAPVAL PLAWSDLSKL QRADAFTLRD VPEKLRRRRK
860 870
DPWADMDRIR QNLARWAEQD ED
Length:872
Mass (Da):96,306
Last modified:October 1, 2002 - v1
Checksum:i3C5AC9FBA2F08921
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008923 Genomic DNA Translation: AAM37266.1
RefSeqiWP_011051566.1, NC_003919.1

Genome annotation databases

EnsemblBacteriaiAAM37266; AAM37266; XAC2414
KEGGixac:XAC2414

Similar proteinsi

Entry informationi

Entry nameiQ8PJW3_XANAC
AccessioniPrimary (citable) accession number: Q8PJW3
Entry historyiIntegrated into UniProtKB/TrEMBL: October 1, 2002
Last sequence update: October 1, 2002
Last modified: March 28, 2018
This is version 96 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health