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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

lig3

Organism
Xanthomonas axonopodis pv. citri (strain 306)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciXAXO190486:GH55-2414-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Name:lig3Imported
Ordered Locus Names:XAC2414Imported
OrganismiXanthomonas axonopodis pv. citri (strain 306)Imported
Taxonomic identifieri190486 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
ProteomesiUP000000576: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi190486.XAC2414.

Structurei

3D structure databases

ProteinModelPortaliQ8PJW3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8PJW3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLSEYRRKR SFDKTREPEP GKTLPPGQRA IFVVQLHHAS RRHYDFRLQV
60 70 80 90 100
GDALKSWAVP KGPSYDPKVK RMAVEVEDHP VDYASFEGEI PRGEYGGGHV
110 120 130 140 150
AQFDHGVWAT AGDPEAQLAK GHLRFELFGN KLKGGWHLVR SGKPARQPQW
160 170 180 190 200
LLFKEDDAYA GTLEADDLLA DVAATPADDV RRAGAGKTQR KGLTTVPPPA
210 220 230 240 250
AKKRGTWAKQ ALALSGARRA EMEDAPFAPQ LAKLVQSPPE GAQWLHEIKW
260 270 280 290 300
DGYRILATVT NGKVRLWSRN ALEWTDKTPE IADAIQSLGL RNAQIDGELI
310 320 330 340 350
AGRGTKEDFN LLQATLSGER QVPLALAVFD LLHVDGVDIS EAPLRERKQL
360 370 380 390 400
LQQVLQAAPH MHLAYSSHVE GDGTEAFRVA GEQHFEGIIS KRADRPYRDG
410 420 430 440 450
RSDDWRKTKQ LASQEYAVVG YTAPKGSRSG FGSLLLATPD PVHGWLYVGR
460 470 480 490 500
VGSGFSDALM REVTQQLEGG GRKPTAHIPT PDTDLRGATW FAPRFVVEVF
510 520 530 540 550
YRGIGGQQLL RQASFKALRP DKRIADLADS DAGNGRSTSS STQRSAKTRA
560 570 580 590 600
AKNAATQVAK RAATRATAPA RKSAVATPSS AALPTLSSPT KLIYPDIRAT
610 620 630 640 650
KGDVWDYYQA VMDHLLPQIV GRPLSIIRCP SGAEKPCFFQ KHHTAGLERV
660 670 680 690 700
SSVKLTEETG TNAYYLVIED APGLLELVQF NALEFHPWGS HADRPDVADR
710 720 730 740 750
VVFDLDPGPD VPFAEVKRAA NDIRKLLAQL ELESFLRVSG GKGLHVVVPL
760 770 780 790 800
NPGCDWEVTK RFAKGFADAL AQAEPQRFIA TATKRLRNKR IFVDYLRNGR
810 820 830 840 850
GATAVASYPL RGRPGAPVAL PLAWSDLSKL QRADAFTLRD VPEKLRRRRK
860 870
DPWADMDRIR QNLARWAEQD ED
Length:872
Mass (Da):96,306
Last modified:October 1, 2002 - v1
Checksum:i3C5AC9FBA2F08921
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008923 Genomic DNA. Translation: AAM37266.1.
RefSeqiNP_642730.1. NC_003919.1.

Genome annotation databases

EnsemblBacteriaiAAM37266; AAM37266; XAC2414.
GeneIDi1156485.
KEGGixac:XAC2414.
PATRICi24056902. VBIXanAxo33670_2513.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008923 Genomic DNA. Translation: AAM37266.1.
RefSeqiNP_642730.1. NC_003919.1.

3D structure databases

ProteinModelPortaliQ8PJW3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi190486.XAC2414.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAM37266; AAM37266; XAC2414.
GeneIDi1156485.
KEGGixac:XAC2414.
PATRICi24056902. VBIXanAxo33670_2513.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciXAXO190486:GH55-2414-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Comparison of the genomes of two Xanthomonas pathogens with differing host specificities."
    da Silva A.C.R., Ferro J.A., Reinach F.C., Farah C.S., Furlan L.R., Quaggio R.B., Monteiro-Vitorello C.B., Van Sluys M.A., Almeida N.F. Jr., Alves L.M.C., do Amaral A.M., Bertolini M.C., Camargo L.E.A., Camarotte G., Cannavan F., Cardozo J., Chambergo F., Ciapina L.P.
    , Cicarelli R.M.B., Coutinho L.L., Cursino-Santos J.R., El-Dorry H., Faria J.B., Ferreira A.J.S., Ferreira R.C.C., Ferro M.I.T., Formighieri E.F., Franco M.C., Greggio C.C., Gruber A., Katsuyama A.M., Kishi L.T., Leite R.P., Lemos E.G.M., Lemos M.V.F., Locali E.C., Machado M.A., Madeira A.M.B.N., Martinez-Rossi N.M., Martins E.C., Meidanis J., Menck C.F.M., Miyaki C.Y., Moon D.H., Moreira L.M., Novo M.T.M., Okura V.K., Oliveira M.C., Oliveira V.R., Pereira H.A., Rossi A., Sena J.A.D., Silva C., de Souza R.F., Spinola L.A.F., Takita M.A., Tamura R.E., Teixeira E.C., Tezza R.I.D., Trindade dos Santos M., Truffi D., Tsai S.M., White F.F., Setubal J.C., Kitajima J.P.
    Nature 417:459-463(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 306Imported.

Entry informationi

Entry nameiQ8PJW3_XANAC
AccessioniPrimary (citable) accession number: Q8PJW3
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2002
Last sequence update: October 1, 2002
Last modified: January 7, 2015
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.