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Protein

Superoxide dismutase [Cu-Zn]

Gene

yojM

Organism
Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Cofactori

Protein has several cofactor binding sites:
  • Cu cationUniRule annotationNote: Binds 1 copper ion per subunit.UniRule annotation
  • Zn2+UniRule annotationNote: Binds 1 zinc ion per subunit.UniRule annotation

GO - Molecular functioni

Keywordsi

Molecular functionOxidoreductaseUniRule annotation
LigandCopperUniRule annotation, Metal-bindingUniRule annotation, ZincUniRule annotation

Enzyme and pathway databases

BioCyciXCAM190485:G1FZM-190-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Cu-Zn]UniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:yojMImported
Ordered Locus Names:XCC0190Imported
OrganismiXanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)Imported
Taxonomic identifieri190485 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
Proteomesi
  • UP000001010 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Interactioni

Protein-protein interaction databases

STRINGi190485.XCC0190

Structurei

3D structure databases

ProteinModelPortaliQ8PDZ4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini14 – 147Sod_CuInterPro annotationAdd BLAST134

Sequence similaritiesi

Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108Z7T Bacteria
COG2032 LUCA
HOGENOMiHOG000263448
KOiK04565
OMAiGKSVIIH

Family and domain databases

CDDicd00305 Cu-Zn_Superoxide_Dismutase, 1 hit
Gene3Di2.60.40.200, 1 hit
InterProiView protein in InterPro
IPR036423 SOD-like_Cu/Zn_dom_sf
IPR024134 SOD_Cu/Zn_/chaperone
IPR018152 SOD_Cu/Zn_BS
IPR001424 SOD_Cu_Zn_dom
PANTHERiPTHR10003 PTHR10003, 1 hit
PfamiView protein in Pfam
PF00080 Sod_Cu, 1 hit
PRINTSiPR00068 CUZNDISMTASE
SUPFAMiSSF49329 SSF49329, 1 hit
PROSITEiView protein in PROSITE
PS00087 SOD_CU_ZN_1, 1 hit
PS00332 SOD_CU_ZN_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q8PDZ4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQQAEAPLAS ASGSLVSGRV VLVPALRGIR LTGTVGGLRP GAVAGFHVHE
60 70 80 90 100
RGDCSAADAS SAGGHFNPTG AAHGRAGNGS HHLGDMDNLR ADAEGVAHLD
110 120 130 140 150
MILSDITLGD AAPSDVLGKA LIVHADADDY RSQPSGNAGA RLACGVIRAT

KWQTPPSQP
Length:159
Mass (Da):15,999
Last modified:October 1, 2002 - v1
Checksum:iA2B1646440AC2B23
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008922 Genomic DNA Translation: AAM39509.1
RefSeqiNP_635585.1, NC_003902.1
WP_011035446.1, NC_003902.1

Genome annotation databases

EnsemblBacteriaiAAM39509; AAM39509; XCC0190
GeneIDi998625
KEGGixcc:XCC0190
PATRICifig|190485.4.peg.216

Similar proteinsi

Entry informationi

Entry nameiQ8PDZ4_XANCP
AccessioniPrimary (citable) accession number: Q8PDZ4
Entry historyiIntegrated into UniProtKB/TrEMBL: October 1, 2002
Last sequence update: October 1, 2002
Last modified: March 28, 2018
This is version 105 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health