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Q8PDD1

- GLGB2_XANCP

UniProt

Q8PDD1 - GLGB2_XANCP

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Protein

1,4-alpha-glucan branching enzyme GlgB 2

Gene

glgB2

Organism
Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.By similarity

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei408 – 4081NucleophileBy similarity
Active sitei461 – 4611Proton donorBy similarity

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciXCAM190485:GIXZ-409-MONOMER.
UniPathwayiUPA00164.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgB 2 (EC:2.4.1.18)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 2
Alpha-(1->4)-glucan branching enzyme 2
Glycogen branching enzyme 2
Short name:
BE 2
Gene namesi
Name:glgB2
Ordered Locus Names:XCC0409
OrganismiXanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
Taxonomic identifieri190485 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
ProteomesiUP000001010: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7297291,4-alpha-glucan branching enzyme GlgB 2PRO_0000188767Add
BLAST

Interactioni

Subunit structurei

Monomer.By similarity

Protein-protein interaction databases

STRINGi190485.XCC0409.

Structurei

3D structure databases

ProteinModelPortaliQ8PDD1.
SMRiQ8PDD1. Positions 126-729.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiNIRSEAC.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8PDD1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAEGGGGSAV ALQDLQAIAA GLPGDAFAVL GPHVQADGRL RVRVLAPGAE
60 70 80 90 100
ALGLIDGRGK LLARMQASPI DGVFEGELPA DAAYRLRIVW PDVVQEIEDP
110 120 130 140 150
YAFAPQIDES ALLQIGAGDG QALRANLGAR HVQVGELPAV RFAVWAPHAQ
160 170 180 190 200
RVAVVGDFNG WEPRRHPMRQ RSGGIWELVL PRVETGARYK YAIITADGRV
210 220 230 240 250
LLKADPVARQ SELPPATASV VASADAFAWT DAEWMARRSA AAEPAPLSIY
260 270 280 290 300
EVHAASWRRD GHDQPLDWVS LAAQLIPYVQ ELGFTHIELL PITEHPFGGS
310 320 330 340 350
WGYQPLGLYA PTARHGSPDG FAQFVDACHR AGIGVILDWV SAHFPDDAHG
360 370 380 390 400
LSQFDGSATY EHADPREGMH RDWNTLIYNY GRPEVTAYLL GSAMEWIAHY
410 420 430 440 450
HLDGLRVDAV ASMLYRDYGR AEGEWVPNAH GGRENLEAVA FLRQLTGEIA
460 470 480 490 500
SQFPGVLTIA EESTAWPGVT APISEGGLGF THKWNMGWMH DTLHYMQRDP
510 520 530 540 550
AARAQHHSQL TFGLVYAFSE RFVLPLSHDE VVHGTGGLLG QMPGDDWRRF
560 570 580 590 600
ANLRAYLALM WAHPGDKLLF MGAEFGQWAD WNHDRSLDWH LLDHAPHRGM
610 620 630 640 650
QQLVRDLNRA LRRVPALYRG NHRADGFEWS VADDARNSVL AFIRHDPDGG
660 670 680 690 700
APLLAVSNLT PQPHHDYRVG VPRAGGWREI LNTDSAHYGG SNLGNGGRLL
710 720
TEPTGMHGHA QSLRLTLPPL ATIYLQAEK
Length:729
Mass (Da):79,972
Last modified:October 1, 2002 - v1
Checksum:iC3D7257138AD810B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE008922 Genomic DNA. Translation: AAM39727.1.
RefSeqiNP_635803.1. NC_003902.1.

Genome annotation databases

EnsemblBacteriaiAAM39727; AAM39727; XCC0409.
GeneIDi1001297.
KEGGixcc:XCC0409.
PATRICi24071425. VBIXanCam115730_0449.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE008922 Genomic DNA. Translation: AAM39727.1 .
RefSeqi NP_635803.1. NC_003902.1.

3D structure databases

ProteinModelPortali Q8PDD1.
SMRi Q8PDD1. Positions 126-729.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 190485.XCC0409.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAM39727 ; AAM39727 ; XCC0409 .
GeneIDi 1001297.
KEGGi xcc:XCC0409.
PATRICi 24071425. VBIXanCam115730_0449.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000283037.
KOi K00700.
OMAi NIRSEAC.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci XCAM190485:GIXZ-409-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Entry informationi

Entry nameiGLGB2_XANCP
AccessioniPrimary (citable) accession number: Q8PDD1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 15, 2003
Last sequence update: October 1, 2002
Last modified: October 1, 2014
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3