1,4-alpha-glucan branching enzyme GlgB 2 - Xanthomonas campestris pv. campestris

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Q8PDD1 (GLGB2_XANCP) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 65. History...

Clusters with 100%, 90%, 50% identity |

Documents (3) |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
1,4-alpha-glucan branching enzyme GlgB 2
EC=2.4.1.18

Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 2
Alpha-(1->4)-glucan branching enzyme 2
Glycogen branching enzyme 2
Short name=BE 2

Gene names

Name:	glgB2
Ordered Locus Names:	XCC0409

Organism

Xanthomonas campestris pv. campestris

Taxonomic identifier

340 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Xanthomonadales › Xanthomonadaceae › Xanthomonas

Protein attributes

Sequence length	729 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity. HAMAP MF_00685
Catalytic activity	Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain. HAMAP MF_00685
Pathway	Glycan biosynthesis; glycogen biosynthesis. HAMAP MF_00685
Subunit structure	Monomer By similarity. HAMAP MF_00685
Sequence similarities	Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.

Ontologies

Keywords
Biological process	Carbohydrate metabolism Glycogen biosynthesis Glycogen metabolism
Molecular function	Glycosyltransferase Transferase
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	glycogen biosynthetic process Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	1,4-alpha-glucan branching enzyme activity Inferred from electronic annotation. Source: EC cation binding Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 729

729

1,4-alpha-glucan branching enzyme GlgB 2 HAMAP MF_00685

PRO_0000188767

Sites

Active site

408

Nucleophile By similarity

Active site

461

Proton donor By similarity

Sequences

Sequence

Length

Mass (Da)

Tools

Q8PDD1 [UniParc].

Last modified October 1, 2002. Version 1.
Checksum: C3D7257138AD810B
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FASTA

729

79,972

        10         20         30         40         50         60 
MAEGGGGSAV ALQDLQAIAA GLPGDAFAVL GPHVQADGRL RVRVLAPGAE ALGLIDGRGK 

        70         80         90        100        110        120 
LLARMQASPI DGVFEGELPA DAAYRLRIVW PDVVQEIEDP YAFAPQIDES ALLQIGAGDG 

       130        140        150        160        170        180 
QALRANLGAR HVQVGELPAV RFAVWAPHAQ RVAVVGDFNG WEPRRHPMRQ RSGGIWELVL 

       190        200        210        220        230        240 
PRVETGARYK YAIITADGRV LLKADPVARQ SELPPATASV VASADAFAWT DAEWMARRSA 

       250        260        270        280        290        300 
AAEPAPLSIY EVHAASWRRD GHDQPLDWVS LAAQLIPYVQ ELGFTHIELL PITEHPFGGS 

       310        320        330        340        350        360 
WGYQPLGLYA PTARHGSPDG FAQFVDACHR AGIGVILDWV SAHFPDDAHG LSQFDGSATY 

       370        380        390        400        410        420 
EHADPREGMH RDWNTLIYNY GRPEVTAYLL GSAMEWIAHY HLDGLRVDAV ASMLYRDYGR 

       430        440        450        460        470        480 
AEGEWVPNAH GGRENLEAVA FLRQLTGEIA SQFPGVLTIA EESTAWPGVT APISEGGLGF 

       490        500        510        520        530        540 
THKWNMGWMH DTLHYMQRDP AARAQHHSQL TFGLVYAFSE RFVLPLSHDE VVHGTGGLLG 

       550        560        570        580        590        600 
QMPGDDWRRF ANLRAYLALM WAHPGDKLLF MGAEFGQWAD WNHDRSLDWH LLDHAPHRGM 

       610        620        630        640        650        660 
QQLVRDLNRA LRRVPALYRG NHRADGFEWS VADDARNSVL AFIRHDPDGG APLLAVSNLT 

       670        680        690        700        710        720 
PQPHHDYRVG VPRAGGWREI LNTDSAHYGG SNLGNGGRLL TEPTGMHGHA QSLRLTLPPL 


ATIYLQAEK

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References

[1]

"Comparison of the genomes of two Xanthomonas pathogens with differing host specificities."
da Silva A.C.R., Ferro J.A., Reinach F.C., Farah C.S., Furlan L.R., Quaggio R.B., Monteiro-Vitorello C.B., Van Sluys M.A., Almeida N.F. Jr., Alves L.M.C., do Amaral A.M., Bertolini M.C., Camargo L.E.A., Camarotte G., Cannavan F., Cardozo J., Chambergo F., Ciapina L.P.

Kitajima J.P.
Nature 417:459-463(2002) [PubMed: 12024217] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 33913 / NCPPB 528 / LMG 568.

Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE008922 Genomic DNA. Translation: AAM39727.1.
RefSeq	NP_635803.1. NC_003902.1.
3D structure databases
ProteinModelPortal	Q8PDD1.
SMR	Q8PDD1. Positions 126-729.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	1001297.
GenomeReviews	Gene locus XCC0409 in contig AE008922_GR.
KEGG	xcc:XCC0409.
PATRIC	24071425. VBIXanCam115730_0449.
Phylogenomic databases
HOGENOM	HBG287139.
OMA	RMQASAI.
ProtClustDB	PRK12568.
Enzyme and pathway databases
BioCyc	XCAM190485:XCC0409-MONOMER.
Family and domain databases
HAMAP	MF_00685. GlgB. [Tree]
InterPro	IPR006407. 1-4-A-glucan_branch_enz. IPR006048. A-amylase_b_C. IPR015902. Alpha_amylase. IPR013780. Glyco_hydro_13_b. IPR006047. Glyco_hydro_13_cat_dom. IPR004193. Glyco_hydro_13_N. IPR013781. Glyco_hydro_subgr_catalytic. IPR017853. Glycoside_hydrolase_SF. IPR013783. Ig-like_fold. IPR014756. Ig_E-set. [Graphical view]
Gene3D	G3DSA:2.60.40.1180. Glyco_hydro_13_b. 1 hit. G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit. G3DSA:2.60.40.10. Ig-like_fold. 2 hits.
KO	K00700.
PANTHER	PTHR10357. Alpha_amylase. 1 hit. PTHR10357:SF13. PTHR10357:SF13. 1 hit.
Pfam	PF00128. Alpha-amylase. 1 hit. PF02806. Alpha-amylase_C. 1 hit. PF02922. CBM_48. 1 hit. [Graphical view]
PIRSF	PIRSF000463. GlgB. 1 hit.
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit. SSF81296. Ig_E-set. 1 hit.
TIGRFAMs	TIGR01515. Branching_enzym. 1 hit.
ProtoNet	Search...

Entry information

Entry name

GLGB2_XANCP

Accession

Primary (citable) accession number: Q8PDD1

Entry history

Integrated into UniProtKB/Swiss-Prot:	August 15, 2003
Last sequence update:	October 1, 2002
Last modified:	January 25, 2012
This is version 65 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program

Relevant documents

Glycosyl hydrolases

Classification of glycosyl hydrolase families and list of entries

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequence annotation (Features)

Molecule processing

Sites

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Enzyme and pathway databases

Family and domain databases

Entry information

Relevant documents