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Protein
Submitted name:

Uncharacterized protein

Gene

XCC0516

Organism
Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciXCAM190485:GIXZ-516-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Ordered Locus Names:XCC0516Imported
OrganismiXanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)Imported
Taxonomic identifieri190485 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
Proteomesi
  • UP000001010 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi190485.XCC0516.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2GSCX-ray2.45A/B/C/D/E1-128[»]
ProteinModelPortaliQ8PD29.
SMRiQ8PD29. Positions 7-123.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8PD29.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105VGT. Bacteria.
ENOG41121RZ. LUCA.
HOGENOMiHOG000024793.
OMAiRELRVWQ.
OrthoDBiEOG6QCDH5.

Family and domain databases

Gene3Di1.20.1440.60. 1 hit.
InterProiIPR012657. 23S_rRNA-intervening_sequence.
[Graphical view]
PfamiPF05635. 23S_rRNA_IVP. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02436. TIGR02436. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8PD29-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MENRESAQRP HERLDAWRDS MELVEMIYRL TEVFPDQERY GLTAQLRRAA
60 70 80 90 100
VSIPSNIAEG AARRSTPDYS RFLSIARGSL SELDTQVQIA ARLGYSRSED
110 120
DQSVRRQVDL VFAKLTALMN ALRRRGAA
Length:128
Mass (Da):14,599
Last modified:October 1, 2002 - v1
Checksum:iB03BC3E915533D58
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008922 Genomic DNA. Translation: AAM39832.1.
RefSeqiNP_635908.1. NC_003902.1.
WP_011035765.1. NC_003902.1.

Genome annotation databases

EnsemblBacteriaiAAM39832; AAM39832; XCC0516.
GeneIDi1001257.
KEGGixcc:XCC0516.
PATRICi24071661. VBIXanCam115730_0566.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008922 Genomic DNA. Translation: AAM39832.1.
RefSeqiNP_635908.1. NC_003902.1.
WP_011035765.1. NC_003902.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2GSCX-ray2.45A/B/C/D/E1-128[»]
ProteinModelPortaliQ8PD29.
SMRiQ8PD29. Positions 7-123.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi190485.XCC0516.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAM39832; AAM39832; XCC0516.
GeneIDi1001257.
KEGGixcc:XCC0516.
PATRICi24071661. VBIXanCam115730_0566.

Phylogenomic databases

eggNOGiENOG4105VGT. Bacteria.
ENOG41121RZ. LUCA.
HOGENOMiHOG000024793.
OMAiRELRVWQ.
OrthoDBiEOG6QCDH5.

Enzyme and pathway databases

BioCyciXCAM190485:GIXZ-516-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ8PD29.

Family and domain databases

Gene3Di1.20.1440.60. 1 hit.
InterProiIPR012657. 23S_rRNA-intervening_sequence.
[Graphical view]
PfamiPF05635. 23S_rRNA_IVP. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02436. TIGR02436. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Comparison of the genomes of two Xanthomonas pathogens with differing host specificities."
    da Silva A.C.R., Ferro J.A., Reinach F.C., Farah C.S., Furlan L.R., Quaggio R.B., Monteiro-Vitorello C.B., Van Sluys M.A., Almeida N.F.Jr., Alves L.M.C., do Amaral A.M., Bertolini M.C., Camargo L.E.A., Camarotte G., Cannavan F., Cardozo J., Chambergo F., Ciapina L.P.
    , Cicarelli R.M.B., Coutinho L.L., Cursino-Santos J.R., El-Dorry H., Faria J.B., Ferreira A.J.S., Ferreira R.C.C., Ferro M.I.T., Formighieri E.F., Franco M.C., Greggio C.C., Gruber A., Katsuyama A.M., Kishi L.T., Leite R.P.Jr., Lemos E.G.M., Lemos M.V.F., Locali E.C., Machado M.A., Madeira A.M.B.N., Martinez-Rossi N.M., Martins E.C., Meidanis J., Menck C.F.M., Miyaki C.Y., Moon D.H., Moreira L.M., Novo M.T.M., Okura V.K., Oliveira M.C., Oliveira V.R., Pereira H.A.Jr., Rossi A., Sena J.A.D., Silva C., de Souza R.F., Spinola L.A.F., Takita M.A., Tamura R.E., Teixeira E.C., Tezza R.I.D., Trindade dos Santos M., Truffi D., Tsai S.M., White F.F., Setubal J.C., Kitajima J.P.
    Nature 417:459-463(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25Imported.
  2. "Crystal structure of the conserved hypothetical cytosolic protein Xcc0516 from Xanthomonas campestris reveals a novel quaternary structure assembled by five four-helix bundles."
    Lin L.Y., Ching C.L., Chin K.H., Chou S.H., Chan N.L.
    Proteins 65:783-786(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.45 ANGSTROMS).

Entry informationi

Entry nameiQ8PD29_XANCP
AccessioniPrimary (citable) accession number: Q8PD29
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2002
Last sequence update: October 1, 2002
Last modified: March 16, 2016
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.