Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Protein SlyX homolog

Gene

slyX

Organism
Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciXCAM190485:GIXZ-1502-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein SlyX homologUniRule annotation
Gene namesi
Name:slyXUniRule annotation
Ordered Locus Names:XCC1504
OrganismiXanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Taxonomic identifieri190485 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
Proteomesi
  • UP000001010 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7878Protein SlyX homologPRO_0000209221Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi190485.XCC1504.

Structurei

Secondary structure

1
78
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi11 – 5646Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3EFGX-ray2.00A1-78[»]
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8PAH9.

Family & Domainsi

Sequence similaritiesi

Belongs to the SlyX family.UniRule annotation

Phylogenomic databases

eggNOGiCOG2900. LUCA.
HOGENOMiHOG000273046.
KOiK03745.
OMAiFQEHALA.
OrthoDBiEOG6H4KCT.

Family and domain databases

HAMAPiMF_00715. SlyX.
InterProiIPR007236. SlyX.
[Graphical view]
PfamiPF04102. SlyX. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8PAH9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHEQLSPRDQ ELEARLVELE TRLSFQEQAL TELSEALADA RLTGARNAEL
60 70
IRHLLEDLGK VRSTLFADAA DEPPPPHY
Length:78
Mass (Da):8,821
Last modified:October 1, 2002 - v1
Checksum:i26F6F3568964F9E7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008922 Genomic DNA. Translation: AAM40800.1.
RefSeqiNP_636876.1. NC_003902.1.
WP_011036690.1. NC_003902.1.

Genome annotation databases

EnsemblBacteriaiAAM40800; AAM40800; XCC1504.
GeneIDi1001927.
KEGGixcc:XCC1504.
PATRICi24073793. VBIXanCam115730_1612.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008922 Genomic DNA. Translation: AAM40800.1.
RefSeqiNP_636876.1. NC_003902.1.
WP_011036690.1. NC_003902.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3EFGX-ray2.00A1-78[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi190485.XCC1504.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAM40800; AAM40800; XCC1504.
GeneIDi1001927.
KEGGixcc:XCC1504.
PATRICi24073793. VBIXanCam115730_1612.

Phylogenomic databases

eggNOGiCOG2900. LUCA.
HOGENOMiHOG000273046.
KOiK03745.
OMAiFQEHALA.
OrthoDBiEOG6H4KCT.

Enzyme and pathway databases

BioCyciXCAM190485:GIXZ-1502-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ8PAH9.

Family and domain databases

HAMAPiMF_00715. SlyX.
InterProiIPR007236. SlyX.
[Graphical view]
PfamiPF04102. SlyX. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Comparison of the genomes of two Xanthomonas pathogens with differing host specificities."
    da Silva A.C.R., Ferro J.A., Reinach F.C., Farah C.S., Furlan L.R., Quaggio R.B., Monteiro-Vitorello C.B., Van Sluys M.A., Almeida N.F. Jr., Alves L.M.C., do Amaral A.M., Bertolini M.C., Camargo L.E.A., Camarotte G., Cannavan F., Cardozo J., Chambergo F., Ciapina L.P.
    , Cicarelli R.M.B., Coutinho L.L., Cursino-Santos J.R., El-Dorry H., Faria J.B., Ferreira A.J.S., Ferreira R.C.C., Ferro M.I.T., Formighieri E.F., Franco M.C., Greggio C.C., Gruber A., Katsuyama A.M., Kishi L.T., Leite R.P., Lemos E.G.M., Lemos M.V.F., Locali E.C., Machado M.A., Madeira A.M.B.N., Martinez-Rossi N.M., Martins E.C., Meidanis J., Menck C.F.M., Miyaki C.Y., Moon D.H., Moreira L.M., Novo M.T.M., Okura V.K., Oliveira M.C., Oliveira V.R., Pereira H.A., Rossi A., Sena J.A.D., Silva C., de Souza R.F., Spinola L.A.F., Takita M.A., Tamura R.E., Teixeira E.C., Tezza R.I.D., Trindade dos Santos M., Truffi D., Tsai S.M., White F.F., Setubal J.C., Kitajima J.P.
    Nature 417:459-463(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25.

Entry informationi

Entry nameiSLYX_XANCP
AccessioniPrimary (citable) accession number: Q8PAH9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 3, 2003
Last sequence update: October 1, 2002
Last modified: November 11, 2015
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.